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IDProjectCategoryView StatusDate SubmittedLast Update
0012014ParaViewBugpublic2011-03-28 08:032016-08-12 09:58
ReporterPaul Melis 
Assigned ToKitware Robot 
PrioritynormalSeveritycrashReproducibilityalways
StatusclosedResolutionmoved 
PlatformLinuxOSUbuntuOS Version10.04.2 x64_64
Product VersionDevelopment 
Target VersionFixed in Version 
Project
Topic Name
Type
Summary0012014: Xdmf dataset written from PV crashes when loading it again
DescriptionNote: there doesn't seem be to a version 3.10 in the Product Version drop-down, so I picked development. This is with the 64 bit binaries of 3.10.0 from paraview.org

Saving a structured points dataset from PV in xmf+hdf5 creates a file that the PV instance can't load anymore as it crashes. The steps below with the wavelet source reproduce the crash, although I encountered this on a real dataset (the attached xmf file)
Steps To Reproduce1. Sources -> Wavelet -> Apply
2. File -> Save data, pick Xdmf data file, e.g wavelet.xmf

The following errors are printed after saving, although the resulting .xmf/.h5 pair looks o.k.

ERROR: In /home/kitware/Kitware/ParaView-3.10/source/VTK/Filtering/vtkDemandDrivenPipeline.cxx, line 827
vtkPVPostFilterExecutive (0x4191640): Input for connection index 0 on input port index 0 for algorithm vtkPVPostFilter(0x41268e0) is of type vtkDataObject, but a vtkDataSet is required.


ERROR: In /home/kitware/Kitware/ParaView-3.10/source/VTK/Filtering/vtkDemandDrivenPipeline.cxx, line 827
vtkPVPostFilterExecutive (0x4191640): Input for connection index 0 on input port index 0 for algorithm vtkPVPostFilter(0x41268e0) is of type vtkDataObject, but a vtkDataSet is required.

3. Load in the saved dataset -> segfault
Additional InformationStack trace seems to suggest xml reading as the problem area:

(gdb) bt
#0 __strncmp_sse42 () at ../sysdeps/x86_64/multiarch/strcmp.S:130
#1 0x00007fffeee47307 in vtk_libxml2___xmlParserInputBufferCreateFilename () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtklibxml2.so.pv3.10
#2 0x00007fffeee15d2b in vtk_libxml2_xmlNewInputFromFile () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtklibxml2.so.pv3.10
#3 0x00007fffeee47cb0 in vtk_libxml2_xmlNoNetExternalEntityLoader () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtklibxml2.so.pv3.10
#4 0x00007fffeee47dc3 in xmlDefaultExternalEntityLoader () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtklibxml2.so.pv3.10
#5 0x00007fffeedffba4 in vtk_libxml2_xmlCreateURLParserCtxt () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtklibxml2.so.pv3.10
#6 0x00007fffeee14cea in vtk_libxml2_xmlReadFile () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtklibxml2.so.pv3.10
#7 0x00007fffef02e681 in XdmfDOM::__Parse(char const*, _xmlDoc**) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libXdmf.so
#8 0x00007fffef02e8b5 in XdmfDOM::Parse(char const*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libXdmf.so
0000009 0x00007fffef269c22 in vtkXdmfDocument::Parse(char const*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkXdmf.so
#10 0x00007fffef25b9d0 in vtkXdmfReader::PrepareDocument() () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkXdmf.so
0000011 0x00007fffef25c033 in vtkXdmfReader::RequestDataObject(vtkInformationVector*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkXdmf.so
#12 0x00007fffe9c67314 in vtkExecutive::CallAlgorithm(vtkInformation*, int, vtkInformationVector**, vtkInformationVector*) ()
   from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkFiltering.so.pv3.10
#13 0x00007fffe9c3c5f8 in vtkCompositeDataPipeline::ExecuteDataObject(vtkInformation*, vtkInformationVector**, vtkInformationVector*) ()
   from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkFiltering.so.pv3.10
#14 0x00007fffe9c3c95f in vtkCompositeDataPipeline::ProcessRequest(vtkInformation*, vtkInformationVector**, vtkInformationVector*) ()
   from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkFiltering.so.pv3.10
#15 0x00007fffe9c5b7bd in vtkDemandDrivenPipeline::UpdateInformation() () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkFiltering.so.pv3.10
#16 0x00007fffeda2b862 in vtkAlgorithmCommand(vtkClientServerInterpreter*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&) ()
   from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkFilteringCS.so
#17 0x00007fffedc2b0e6 in vtkDataReaderCommand(vtkClientServerInterpreter*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&) ()
   from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkIOCS.so
#18 0x00007fffef387f3a in vtkXdmfReaderCommand(vtkClientServerInterpreter*, vtkObjectBase*, char const*, vtkClientServerStream const&, vtkClientServerStream&) ()
   from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkXdmfCS.so
#19 0x00007fffed6ffc5c in vtkClientServerInterpreter::ProcessCommandInvoke(vtkClientServerStream const&, int) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkClientServer.so
#20 0x00007fffed700606 in vtkClientServerInterpreter::ProcessOneMessage(vtkClientServerStream const&, int) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkClientServer.so
#21 0x00007fffed700aad in vtkClientServerInterpreter::ProcessStream(vtkClientServerStream const&) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkClientServer.so
#22 0x00007ffff211b260 in vtkSelfConnection::ProcessStreamLocally(vtkClientServerStream&) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkPVServerCommon.so
#23 0x00007ffff20bcc61 in vtkProcessModuleConnection::SendStream(unsigned int, vtkClientServerStream&) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkPVServerCommon.so
#24 0x00007ffff20bed39 in vtkProcessModuleConnectionManager::SendStream(long long, unsigned int, vtkClientServerStream&, int) ()
   from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkPVServerCommon.so
#25 0x00007ffff20c4173 in vtkProcessModule::SendStream(long long, unsigned int, vtkClientServerStream&, int) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkPVServerCommon.so
#26 0x00007ffff5c71d16 in vtkSMSourceProxy::UpdatePipelineInformation() () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libvtkPVServerManager.so
#27 0x00007ffff75af918 in pqPipelineSource::setDefaultPropertyValues() () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libpqCore.so
#28 0x00007ffff75a0f1e in pqObjectBuilder::createReader(QString const&, QString const&, QStringList const&, pqServer*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libpqCore.so
#29 0x00007ffff7ead499 in pqLoadDataReaction::LoadFile(QStringList const&, pqServer*, QPair<QString, QString> const&) ()
   from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libpqApplicationComponents.so
#30 0x00007ffff7eae465 in pqLoadDataReaction::loadData(QList<QStringList> const&) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libpqApplicationComponents.so
#31 0x00007ffff7eaed4e in pqLoadDataReaction::loadData() () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libpqApplicationComponents.so
#32 0x00007ffff7ed53c8 in pqLoadDataReaction::onTriggered() () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libpqApplicationComponents.so
#33 0x00007ffff7ed63fe in pqReaction::qt_metacall(QMetaObject::Call, int, void**) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libpqApplicationComponents.so
#34 0x00007ffff7ed52b5 in pqLoadDataReaction::qt_metacall(QMetaObject::Call, int, void**) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libpqApplicationComponents.so
#35 0x00007ffff253087e in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtCore.so.4
#36 0x00007ffff3042ea2 in QAction::triggered(bool) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#37 0x00007ffff3044220 in QAction::activate(QAction::ActionEvent) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#38 0x00007ffff30460ee in QAction::event(QEvent*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#39 0x00007ffff3049bee in QApplicationPrivate::notify_helper(QObject*, QEvent*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#40 0x00007ffff304ee12 in QApplication::notify(QObject*, QEvent*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#41 0x00007ffff251d7f3 in QCoreApplication::notifyInternal(QObject*, QEvent*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtCore.so.4
#42 0x00007ffff308536c in ?? () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#43 0x00007ffff3086368 in ?? () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#44 0x00007ffff3050af0 in QApplication::notify(QObject*, QEvent*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#45 0x00007ffff251d7f3 in QCoreApplication::notifyInternal(QObject*, QEvent*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtCore.so.4
---Type <return> to continue, or q <return> to quit---
#46 0x00007ffff3049ebc in ?? () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#47 0x00007ffff30eed62 in ?? () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#48 0x00007ffff30f0da7 in ?? () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
0000049 0x00007ffff30caee4 in QApplication::x11ProcessEvent(_XEvent*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#50 0x00007ffff30e357a in qt_x11_wait_for_window_manager(QWidget*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#51 0x00007ffff34961a1 in QSplashScreen::finish(QWidget*) () from /home/opti/ParaView-3.10.0-Linux-x86_64/lib/paraview-3.10/libQtGui.so.4
#52 0x000000000040735e in pqparaviewInitializer::Initialize(int, char**) ()
#53 0x0000000000406924 in main ()
TagsNo tags attached.
Relationships
Attached Files? cut2_vectors.xmf (1,730) 2011-03-28 08:03
https://www.vtk.org/Bug/file/8778/cut2_vectors.xmf
Issue History
Date ModifiedUsernameFieldChange
2011-03-28 08:03Paul MelisNew Issue
2011-03-28 08:03Paul MelisFile Added: cut2_vectors.xmf
2011-03-28 08:16Paul MelisNote Added: 0025919
2016-08-12 09:58Kitware RobotNote Added: 0037946
2016-08-12 09:58Kitware RobotStatusbacklog => closed
2016-08-12 09:58Kitware RobotResolutionopen => moved
2016-08-12 09:58Kitware RobotAssigned To => Kitware Robot

Notes
(0025919)
Paul Melis   
2011-03-28 08:16   
Seems to be a regression, the prebuilt 3.8.2 x86_64 binaries load the files without problem
(0037946)
Kitware Robot   
2016-08-12 09:58   
Resolving issue as `moved`.

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