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IDProjectCategoryView StatusDate SubmittedLast Update
0016814ParaView(No Category)public2016-08-10 17:322016-08-12 10:00
ReporterOrion Poplawski 
Assigned ToKitware Robot 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusclosedResolutionmoved 
PlatformOSOS Version
Product Version5.1 
Target VersionFixed in Version 
Summary0016814: libvtkIOAMR.so fails to build with MPI version of HDF5
DescriptionIn my Fedora builds of paraview 5.1.2, I'm finally properly building against the MPI version of HDF5 to fix a compile error with Xdmf2 when I didn't. However, this is leading to a build failure of libvtkIOAMR.so:

/usr/bin/g++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -O2 -g -DNDEBUG -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libvtkIOAMR.so.1 -o ../../../lib/libvtkIOAMR.so.1 CMakeFiles/vtkIOAMR.dir/vtkAMRDataSetCache.cxx.o CMakeFiles/vtkIOAMR.dir/vtkAMRBaseParticlesReader.cxx.o CMakeFiles/vtkIOAMR.dir/vtkAMRBaseReader.cxx.o CMakeFiles/vtkIOAMR.dir/vtkAMREnzoParticlesReader.cxx.o CMakeFiles/vtkIOAMR.dir/vtkAMREnzoReader.cxx.o CMakeFiles/vtkIOAMR.dir/vtkAMREnzoReaderInternal.cxx.o CMakeFiles/vtkIOAMR.dir/vtkAMRFlashParticlesReader.cxx.o CMakeFiles/vtkIOAMR.dir/vtkAMRFlashReader.cxx.o CMakeFiles/vtkIOAMR.dir/vtkAMRFlashReaderInternal.cxx.o ../../../lib/libvtkFiltersAMR.so.1 ../../../lib/libvtkParallelCore.so.1 /usr/lib64/openmpi/lib/libhdf5.so -lz -ldl -lm /usr/lib64/openmpi/lib/libhdf5_hl.so ../../../lib/libvtkIOLegacy.so.1 ../../../lib/libvtkIOCore.so.1 ../../../lib/libvtkFiltersGeneral.so.1 ../../../lib/libvtkCommonComputationalGeometry.so.1 ../../../lib/libvtkFiltersCore.so.1 ../../../lib/libvtkCommonExecutionModel.so.1 ../../../lib/libvtkCommonDataModel.so.1 ../../../lib/libvtkCommonMisc.so.1 ../../../lib/libvtkCommonSystem.so.1 ../../../lib/libvtksys.so.1 -ldl ../../../lib/libvtkCommonTransforms.so.1 ../../../lib/libvtkCommonMath.so.1 ../../../lib/libvtkCommonCore.so.1 -Wl,-rpath,/builddir/build/BUILD/ParaView-v5.1.2/fedora-openmpi/lib:/usr/lib64/openmpi/lib:
CMakeFiles/vtkIOAMR.dir/vtkAMREnzoParticlesReader.cxx.o: In function `MPI::Win::Set_name(char const*)':
/usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/win_inln.h:293: undefined reference to `MPI_Win_set_name'
CMakeFiles/vtkIOAMR.dir/vtkAMREnzoParticlesReader.cxx.o: In function `MPI::Win::Set_attr(int, void const*)':
/usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/win_inln.h:286: undefined reference to `MPI_Win_set_attr'

and lots more. It looks like anything that builds against hdf5 in MPI mode will need to link against the MPI libraries as well. This is what the vtkxdmf2 module appears to do.
TagsNo tags attached.
ProjectTBD
Topic Name
Typeincorrect functionality
Attached Files

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  Notes
(0039116)
Kitware Robot (administrator)
2016-08-12 10:00

 Resolving issue as `moved`.

This issue tracker is no longer used. Further discussion of this issue may take place in the current ParaView Issues page linked in the banner at the top of this page.

 Issue History
Date Modified Username Field Change
2016-08-10 17:32 Orion Poplawski New Issue
2016-08-12 10:00 Kitware Robot Note Added: 0039116
2016-08-12 10:00 Kitware Robot Status backlog => closed
2016-08-12 10:00 Kitware Robot Resolution open => moved
2016-08-12 10:00 Kitware Robot Assigned To => Kitware Robot

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