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Martha <br>
<br>
Build paraview as usual, ignore all the guff about
PARAVIEW_EXTRA_EXTERNAL_MODULES, remove this from your paraview build,
remove any CSCS addons you might have specified from paraview 'core'
build.<br>
<br>
Then build a new new project which will be plugins, using the
cmakelists from the root of CSCS stuff. Enter the paraview build dir,
enable CSCSCommon and netcdf, (netcdf will pick up common when it needs
it - fingers crossed).<br>
<br>
then try making it all. Of course it won't actually work, but that's
what I've been trying to say all week!<br>
When it fails, ask Burlen for his netCDF adaptor stuff from visit and
we can all get on with other stuff...<br>
<br>
JB<br>
<br>
<blockquote
cite="mid:DA1ACC97973AC240ACCF5E098D8188410A03F9@xmbv3802.northgrum.com"
type="cite">
<pre wrap="">John,
I must be missing something. I did as you specified below, then went to
the ParaView directory,
Ran ccmake several times, enabling the correct options per the CSCS web
site(PARAVIEW_EXTRA_EXTERNAL_MODULES,
PARAVIEW_USE_CSCSNetCDF, and the source directory variable) , and ran
make, but again, the same include file was not located, even though I
see it is there in the vtkCSCS directory tree.
Was I supposed to run ccmake under the vtkCSCS trunk before running
ccmake for ParaView? I did try to do this,
Only to get an error concering "Policy" and the directions for resolving
the error were unclear.
I am a novice concerning ccmake, as the first time I have used it was
last week.
Thanks.
Martha Tonkin
-----Original Message-----
From: John Biddiscombe [<a class="moz-txt-link-freetext" href="mailto:biddisco@cscs.ch">mailto:biddisco@cscs.ch</a>]
Sent: Wednesday, March 25, 2009 10:21 AM
To: Tonkin, Martha E (IS)
Cc: Carbonari, Katie (IS); Paraview Mailing List
Subject: Re: [Paraview] using netcdf in paraview
Martha (+put back on paraview list for reference and google)
My Bad. One of the changes I made to the netCDF code was to handle
series of files (one file per process, or one per timestep) using
another class in vtkCSCSCommon Best thing is check out all of it from
here...
<a class="moz-txt-link-freetext" href="https://svn.cscs.ch/vtkContrib/trunk/vtkCSCS/">https://svn.cscs.ch/vtkContrib/trunk/vtkCSCS/</a>
and use the cmakelists in the root pv3-plugins folder.
you need CSCSCommomn and netCDF enabled.
Fix the netCDF reader and send me the patches please :)
JB
</pre>
<blockquote type="cite">
<pre wrap="">Katie,
I was able to check out vtkNetCDF from the SVN server; I had tried
before using the web site's instructions, but it wouldn't work, I
suppose because of our firewall; however the "https" in the URL that
Mr. Biddiscome gave us did make a difference.
However, when I attempted to build ParaView 3.4 with that vtkNetCDF
module, I got an error once again, this time when for
vtkNetCDFReader.cxx; what is missing is FileSeriesFinder.h.
I cannot find that include file anywhere, in ParaView3.4, ParaView3.3,
</pre>
</blockquote>
<pre wrap=""><!---->
</pre>
<blockquote type="cite">
<pre wrap="">etc, so I don't know if it was inadvertently left out of the vtkNetCDF
</pre>
</blockquote>
<pre wrap=""><!---->
</pre>
<blockquote type="cite">
<pre wrap="">distribution or what.
Martha
-----Original Message-----
From: Carbonari, Katie (IS)
Sent: Tuesday, March 24, 2009 5:15 PM
To: Tonkin, Martha E (IS)
Subject: FW: [Paraview] using netcdf in paraview
-----Original Message-----
From: John Biddiscombe [<a class="moz-txt-link-freetext" href="mailto:biddisco@cscs.ch">mailto:biddisco@cscs.ch</a>]
Sent: Tue 3/24/2009 5:09 PM
To: Berk Geveci
Cc: Carbonari, Katie (IS); <a class="moz-txt-link-abbreviated" href="mailto:paraview@paraview.org">paraview@paraview.org</a>
Subject: Re: [Paraview] using netcdf in paraview
Katie
Just looking again at the error messages makes me realize thet you're
using a very old vtkCSCSnetCDF the version in here
<a class="moz-txt-link-freetext" href="https://svn.cscs.ch/vtkContrib/trunk/vtkCSCS/vtkNetCDF/">https://svn.cscs.ch/vtkContrib/trunk/vtkCSCS/vtkNetCDF/</a> is much more
recent and will at least compile without errors. It ewas intended for
meteo data (ocean/atmosphere) and so you should get something out of
it but the changes I made a few months back will have broken the core
load of data depending on which convention you are using.
My intention was to create subclasses for each supported convention,
rather than try to support all of them with aton of options - which is
</pre>
</blockquote>
<pre wrap=""><!---->
</pre>
<blockquote type="cite">
<pre wrap="">what the current reader does. If you're familiar with vtk code, you'll
</pre>
</blockquote>
<pre wrap=""><!---->
</pre>
<blockquote type="cite">
<pre wrap="">son work out how to fix it.
I'll take a look at again it in a few weeks.
JB
Hmmm. It sounds like there is version mismatch between ParaView
</pre>
</blockquote>
<pre wrap=""><!---->and
</pre>
<blockquote type="cite">
<pre wrap=""> the plugin. We deprecated those classes not long ago. Are you
</pre>
</blockquote>
<pre wrap=""><!---->using
</pre>
<blockquote type="cite">
<pre wrap=""> cvs ParaView?
-berk
2009/3/23 Carbonari, Katie (IS) <a class="moz-txt-link-rfc2396E" href="mailto:Katie.Carbonari@ngc.com"><Katie.Carbonari@ngc.com></a>
<a class="moz-txt-link-rfc2396E" href="mailto:Katie.Carbonari@ngc.com"><mailto:Katie.Carbonari@ngc.com></a> :
Hi there. I'm trying to read netcdf data into paraview,
</pre>
</blockquote>
<pre wrap=""><!---->but am
</pre>
<blockquote type="cite">
<pre wrap="">having lots
of issues. I was following these directions (from here:
<a class="moz-txt-link-freetext" href="http://www.cscs.ch/index.php?option=com_content&task=view&id=96&Itemid">http://www.cscs.ch/index.php?option=com_content&task=view&id=96&Itemid</a>
=1
32):
Please build ParaView using the CMake advanced option
PARAVIEW_EXTRA_EXTERNAL_MODULES set to CSCSNetCDF rerun
</pre>
</blockquote>
<pre wrap=""><!---->configure
</pre>
<blockquote type="cite">
<pre wrap="">and set
PARAVIEW_USE_CSCSNetCDF to ON, then rerun configure and
</pre>
</blockquote>
<pre wrap=""><!---->enter the
</pre>
<blockquote type="cite">
<pre wrap="">name of
the directory where the source has been extracted.
Build paraview and the netCDF reader should be embedded.
Building as a vtk module is supported, documentation
</pre>
</blockquote>
<pre wrap=""><!---->will be
</pre>
<blockquote type="cite">
<pre wrap="">provided as
soon as possible. (Some changes have recently been made
</pre>
</blockquote>
<pre wrap=""><!---->which may
</pre>
<blockquote type="cite">
<pre wrap="">break the
existing build, these will be fixed shortly).
But when we make Paraview, it's not finding a bunch of
</pre>
</blockquote>
<pre wrap=""><!---->files
</pre>
<blockquote type="cite">
<pre wrap=""> (vtkMultiGroupDataInformation.h, vtkMultiGroupDataSet.h,
vtkMultiGroupSetAlgorithm.h).
Any advice on how to make this work? Or maybe a better
</pre>
</blockquote>
<pre wrap=""><!---->way to read
</pre>
<blockquote type="cite">
<pre wrap="">in netcdf
files?
Thanks,
Katie
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</pre>
</blockquote>
<pre wrap=""><!---->Wiki at:
</pre>
<blockquote type="cite">
<pre wrap=""> <a class="moz-txt-link-freetext" href="http://paraview.org/Wiki/ParaView">http://paraview.org/Wiki/ParaView</a>
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Please keep messages on-topic and check the ParaView Wiki at:
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</pre>
</blockquote>
<pre wrap=""><!---->
</pre>
</blockquote>
<br>
<br>
<pre class="moz-signature" cols="78">--
John Biddiscombe, email:biddisco @ cscs.ch
<a class="moz-txt-link-freetext" href="http://www.cscs.ch/">http://www.cscs.ch/</a>
CSCS, Swiss National Supercomputing Centre | Tel: +41 (91) 610.82.07
Via Cantonale, 6928 Manno, Switzerland | Fax: +41 (91) 610.82.82</pre>
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