You need to set the PARAVIEW_DATA_ROOT value in your paraview configuration. The information is in the previous email on where to download ParaViewData which is what you need to set PARAVIEW_DATA_ROOT to. That will enable checking the results of the coprocessing tests. The 2 tests which run essentially just checked that it was able to do coprocessing without crashing but didn't check the results (i.e. the images) to see if they are correct. It needs the baseline images from ParaViewData in order to do that.<br>
<br>Andy<br><br><div class="gmail_quote">On Wed, Dec 7, 2011 at 3:39 PM, peacemaker <span dir="ltr"><<a href="mailto:peacemaker1@web.de" target="_blank">peacemaker1@web.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<u></u>
<div style="padding-left:10px;padding-right:10px;padding-top:15px" name="Compose message area">
<div><font face="Arial" size="2">Hi Andy,</font></div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2">thanks for the quick answer. I've downloaded
Paraview from: <a title="http://www.paraview.org/files/v3.12/ParaView-3.12.0.tar.gz
STRG + Klicken, um Verknüpfung zu folgen" href="http://www.paraview.org/files/v3.12/ParaView-3.12.0.tar.gz" target="_blank">http://www.paraview.org/files/v3.12/ParaView-3.12.0.tar.gz</a> and
compiled it with coprocessing. When I run <font face="Times New Roman" size="3">"ctest -V -R CoProcessing"<font face="Arial" size="2"> in my
Paraview-bin directory there seem to be just 2 Tests running and I get the
following output:</font></font></font></div>
<div><font face="Arial" size="2"><a href="mailto:orschews@Lap:%7E/projects/ParaView-bin$" target="_blank">orschews@Lap:~/projects/ParaView-bin$</a>
ctest -V -R CoProcessing<br>UpdateCTestConfiguration from
:/home/orschews/projects/ParaView-bin/DartConfiguration.tcl<br>Parse Config
file:/home/orschews/projects/ParaView-bin/DartConfiguration.tcl<br> Add
coverage exclude regular expressions.<br> Add coverage exclude:
Common.KWCommon.*<br> Add coverage exclude: vtk.*CSInit.cxx<br> Add
coverage exclude: vtkKWParaViewInit.cxx<br> Add coverage exclude:
vtk[^\.]+ClientServer.cxx<br> Add coverage exclude:
vtk[^\.]+Python.cxx<br> Add coverage exclude: vtkSNL<br> Add coverage
exclude: GUI/Widgets<br> Add coverage exclude: moc_[^\.]+.cxx<br> Add
coverage exclude: ui_[^\.]+.h<br> Add coverage exclude:
qrc_[^\.]+.cxx<br> Add coverage exclude:
Utilities.Xdmf2.libsrc.*<br> Add coverage exclude:
Utilities.VisItBridge.avt<br> Add coverage exclude:
Utilities.VisItBridge.CMake<br> Add coverage exclude:
Utilities.VisItBridge.common<br> Add coverage exclude:
Utilities.VisItBridge.databases<br> Add coverage exclude:
Utilities.VisItBridge.include<br> Add coverage exclude:
Utilities.VisItBridge.visit_vtk<br> Add coverage exclude:
Utilities.protobuf<br> Add coverage exclude: vtk.*TCLInit.cxx<br> Add
coverage exclude: vtk[^\.]+(Java|Python|Tcl).cxx<br> Add coverage exclude:
Utilities.kwsys<br> Add coverage exclude: Utilities.vtksys<br> Add
coverage exclude: Utilities.vtkmetaio<br> Add coverage exclude:
Utilities.vtklibproj4<br> Add coverage exclude:
Utilities.vtkalglib<br> Add coverage exclude: Utilities.octree<br> Add
coverage exclude: .*vtkOpenGLState.*<br> Add coverage exclude:
.*Testing.Cxx.*cxx<br> Add coverage exclude: .*Testing.Cxx.*h<br> Add
coverage exclude: .*moc_.*cxx<br>UpdateCTestConfiguration from
:/home/orschews/projects/ParaView-bin/DartConfiguration.tcl<br>Parse Config
file:/home/orschews/projects/ParaView-bin/DartConfiguration.tcl<br>Test project
/home/orschews/projects/ParaView-bin<br>Constructing a list of tests<br>Done
constructing a list of tests<br>Checking test dependency graph...<br>Checking
test dependency graph end<br>test 372<br> Start 372:
CoProcessingTestPythonScript</font></div>
<div> </div>
<div><font face="Arial" size="2">372: Test command:
/home/orschews/projects/ParaView-bin/bin/CoProcessingPythonScriptExample
"/home/orschews/projects/ParaView3/CoProcessing/CoProcessor/Testing/Cxx/PythonScriptTest.py"<br>372:
Test timeout computed to be: 1500<br>372: Initializing MPI.<br>372: Finished run
with 0 errors.<br>1/2 Test #372: CoProcessingTestPythonScript
....... Passed 7.41 sec<br>test
373<br> Start 373:
PCoProcessingPythonScriptExample</font></div>
<div> </div>
<div><font face="Arial" size="2">373: Test command: /usr/bin/mpiexec "-np" "2"
"/home/orschews/projects/ParaView-bin/bin/CoProcessingPythonScriptExample"
"/home/orschews/projects/ParaView3/CoProcessing/CoProcessor/Testing/Cxx/PythonScriptTest2.py"<br>373:
Test timeout computed to be: 1500<br>373: Initializing MPI.<br>373: Initializing
MPI.<br>373: Finished run with 0 errors.<br>373: Finished run with 0
errors.<br>2/2 Test #373: PCoProcessingPythonScriptExample ...
Passed 1.99 sec</font></div>
<div> </div>
<div><font face="Arial" size="2">The following tests
passed:<br> CoProcessingTestPythonScript<br> PCoProcessingPythonScriptExample</font></div>
<div> </div>
<div><font face="Arial" size="2">100% tests passed, 0 tests failed out of
2</font></div>
<div> </div>
<div><font face="Arial" size="2">Total Test time (real) = 11.18 sec<br><a href="mailto:orschews@Lap:%7E/projects/ParaView-bin$" target="_blank">orschews@Lap:~/projects/ParaView-bin$</a>
</font></div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2"></font> </div>
<div> </div>
<div style="font:10pt Tahoma">
<div><font face="Arial"></font><br></div>
<div style="background:none repeat scroll 0% 0% rgb(245,245,245)">
<div><b>From:</b> <a title="mailto:andy.bauer@kitware.com
STRG + Klicken, um Verknüpfung zu folgen" href="mailto:andy.bauer@kitware.com" target="_blank">Andy Bauer</a> </div>
<div><b>Sent:</b> Tuesday, December 06, 2011 8:53 PM</div>
<div><b>To:</b> <a title="mailto:peacemaker1@web.de
STRG + Klicken, um Verknüpfung zu folgen" href="mailto:peacemaker1@web.de" target="_blank">peacemaker</a> </div>
<div><b>Cc:</b> <a title="mailto:paraview@paraview.org
STRG + Klicken, um Verknüpfung zu folgen" href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a> </div>
<div><b>Subject:</b> Re: [Paraview] PythonScriptCoProcessingExample mpirun
Problem</div></div></div>
<div><br></div>Hi Marek,<br><br>I'm a bit confused. Where are you getting
your CoProcessing executable from? If I run the coprocessing library tests
I don't see any failures on my machine and they're running in parallel.
Could you send me the results of doing "ctest -V -R CoProcessing" on your
machine? There should be 6 tests that run. The
PCoProcessingPythonScriptExampleOne tests the coprocessing tools with a 2
process run. You may need to check out ParaViewData (<a title="http://www.paraview.org/paraview/resources/software.html
STRG + Klicken, um Verknüpfung zu folgen" href="http://www.paraview.org/paraview/resources/software.html" target="_blank">http://www.paraview.org/paraview/resources/software.html</a>)
and add that option in the cmake configuration.<br><br>Andy<br><br>
<div class="gmail_quote">On Tue, Dec 6, 2011 at 3:31 AM, peacemaker <span dir="ltr"><<a href="mailto:peacemaker1@web.de" target="_blank">peacemaker1@web.de</a>></span> wrote:<br>
<blockquote style="border-left:1px solid rgb(204,204,204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex" class="gmail_quote"><u></u>
<div style="padding-left:10px;padding-right:10px;padding-top:15px" name="Compose message area">
<div><font face="Arial" size="2">Hi,</font></div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2">Im trying to run the
PythonScriptCoProcessingExample(.cxx) included in ParaView sourcecode - this
is my first "getting in touch" with MPI + ParaView (and Coprocessing
of course) so maybe it`s just a very simple problem. I already succesfully
compiled Paraview with Coprocessing and python (Ubuntu 11.10) and I`m running
the source with COPROCESSOR_USE_MPI. </font></div>
<div><font face="Arial" size="2">When I run it like: </font></div>
<div><font face="Arial" size="2">mpirun -n 1 ./CoProcessing ./PythonScriptTest.py
</font></div>
<div><font face="Arial" size="2">then I get as result CPGrid0_mpirun1.png and
CPPressure0_mpirun1.png - looks good.</font></div>
<div><font face="Arial" size="2">If I try:</font></div>
<div><font face="Arial" size="2">mpirun -n 2 ./CoProcessing
./PythonScriptTest.py </font></div>
<div><font face="Arial" size="2">then I get as result CPGrid0_mpirun2.png and
CPPressure0_mpirun2.png - these pictures seem to be incorrect. </font></div>
<div><font face="Arial" size="2">In vtkPVCustomTestDriver.cxx there are source
lines like:</font></div>
<div><font face="Arial" size="2">...</font></div>
<div><font face="Arial" size="2">#ifdef COPROCESSOR_USE_MPI<br> myid =
vtkMPICommunicator::GetWorldCommunicator()->GetLocalProcessId();<br>#endif</font></div>
<div><font face="Arial" size="2">....</font></div>
<div><font face="Arial" size="2">gridBuilder->SetSpacing(spacing);<br>
double origin[3] = {myid*49*.2,20,300};</font></div>
<div><font face="Arial" size="2">.....</font></div>
<div><font face="Arial" size="2">If I understand it correctly there should be just
a shift on the x-axis between the grids? The pictures get more and more messy,
when I increase the numer of processes.</font></div>
<div><font face="Arial" size="2">After little messing around with the pyton-script
needed to run this example (see bottom of this Mail) I got the following
output when running it with mpirun -n 3:
CPPressure0_changedscript_mpirun3.png. The halfs of the 2nd and 3rd grid are
missing.</font></div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2">What am I doing wrong? Is this example not
supposed to be run with MPI? How does Coprocessing merge the data from
different processes and how does the picture get built?</font></div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2">I already tested this on a different PC with
the same result. I hope you can help me. </font></div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2">Best wishes</font></div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2">Marek</font></div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2"></font> </div>
<div><font face="Arial" size="2">changed Python Script:</font></div>
<div><font face="Arial" size="2">def DoCoProcessing(datadescription):<br>
timestep = datadescription.GetTimeStep()</font></div>
<div> </div>
<div><font face="Arial" size="2"> grid =
datadescription.GetInputDescriptionByName("input").GetGrid()<br>
pressure = grid.GetPointData().GetArray('Pressure')</font></div>
<div> </div>
<div><font face="Arial" size="2"># print grid</font></div>
<div> </div>
<div><font face="Arial" size="2">
#grid.GetPointData().SetScalars(pressure)<br>
obj.SetOutput(grid)<br># print obj</font></div>
<div> </div>
<div><font face="Arial" size="2"> # get global range of Pressure<br>
di = trivialproducer.GetDataInformation(0)<br>
trivialproducer.UpdatePipeline()<br> di.Update()<br> pdi =
di.GetPointDataInformation()<br># print pdi<br> ai =
pdi.GetArrayInformation('Pressure')<br> pressurerange =
ai.GetComponentRange(0)</font></div>
<div> </div>
<div><font face="Arial" size="2"> contour.Isosurfaces =
.5*(pressurerange[0]+pressurerange[1])</font></div>
<div> </div>
<div><font face="Arial" size="2"> # now output the results to the screen as
well as taking<br> # a screen shot of the view<br> #setup a
window<br> #rep = Show(contour)<br> #ren = Render()</font></div>
<div> </div>
<div><font face="Arial" size="2"> #set the background color<br>
#ren.Background=[1,1,1] #white</font></div>
<div> </div>
<div><font face="Arial" size="2"> #set image size<br> #ren.ViewSize =
[1000, 1000] #[width, height]</font></div>
<div> </div>
<div><font face="Arial" size="2"> #set representation<br>
#rep.Representation="Surface"</font></div>
<div> </div>
<div><font face="Arial" size="2"> #save screenshot<br>
#gridimagefilename = 'CPGrid'+str(timestep) + '.png'<br>
#WriteImage(gridimagefilename)</font></div>
<div> </div>
<div><font face="Arial" size="2"> rep = Show(trivialproducer)<br>
#rep.LookupTable = MakeBlueToRedLT(pressurerange[0],
pressurerange[1])<br> #rep.ColorArrayName = 'Pressure'<br>
#rep.ColorAttributeType = 'POINT_DATA'<br> #set representation<br>
rep.Representation="Wireframe"<br> #rep = Show(contour)<br> #set
the background color<br> ren = Render()<br>
ren.Background=[0,0,0] #white<br> ren.ViewSize = [1000, 1000]
#[width, height]</font></div>
<div> </div>
<div><font face="Arial" size="2"> pressureimagefilename =
'CPPressure'+str(timestep) + '.png'<br>
WriteImage(pressureimagefilename)<br> return</font></div>
<div> </div>
<div><font face="Arial" size="2">def
RequestDataDescription(datadescription):<br> time =
datadescription.GetTime()<br> timestep =
datadescription.GetTimeStep()<br> print timestep<br> if timestep %
20 == 0:<br> # add in some fields<br>
#print 'added Pressure and wanting to do coprocessing'<br>
datadescription.GetInputDescriptionByName("input").AddPointField("Pressure")<br>
datadescription.GetInputDescriptionByName('input').GenerateMeshOn()<br>
return</font></div>
<div> </div>
<div><font face="Arial" size="2"># the code below is needed to import objects from
paraview.simple<br># plus the definition of vtkTrivialProducer into this
python script.<br>try: paraview.simple<br>except: from paraview.simple import
*</font></div>
<div> </div>
<div><font face="Arial" size="2">trivialproducer = TrivialProducer()<br>contour =
Contour(Input=trivialproducer)</font></div>
<div> </div>
<div><font face="Arial" size="2">obj =
trivialproducer.GetClientSideObject()<br></font></div></div><br>_______________________________________________<br>Powered
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