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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Man, have I had that problem before. What I did, which finally solved it, on Linux, was the following – both at build time and run time:<o:p></o:p></span></p>
<p class="MsoListParagraph" style="text-indent:-.25in;mso-list:l0 level1 lfo1"><![if !supportLists]><span style="font-size:11.0pt;font-family:Symbol;color:#1F497D"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">printenv | egrep PY. Then, take anything that sets up python and delete it.<o:p></o:p></span></p>
<p class="MsoListParagraph" style="text-indent:-.25in;mso-list:l0 level1 lfo1"><![if !supportLists]><span style="font-size:11.0pt;font-family:Symbol;color:#1F497D"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">setenv PATH path-to-your-python-executable:$PATH (be sure to put your path before the $PATH).<o:p></o:p></span></p>
<p class="MsoListParagraph" style="text-indent:-.25in;mso-list:l0 level1 lfo1"><![if !supportLists]><span style="font-size:11.0pt;font-family:Symbol;color:#1F497D"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">setenv PYTHONPATH path-to-your-python-builds-modules, usually in lib/python-2.6 or somesuch.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I think that is correct – my problem build is on a computer that I can’t get at this second.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Test with:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">which python<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Then run ParaView, and run Tools/ Python Shell. Type ‘import os’, then ‘os’. It should tell you where your modules are coming from.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I am sure the Pyton gurus on the list could do better, but there are some ideas.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Alan<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> paraview-bounces@paraview.org [mailto:paraview-bounces@paraview.org]
<b>On Behalf Of </b>Chukwudi Chukwudozie<br>
<b>Sent:</b> Friday, March 22, 2013 8:55 AM<br>
<b>To:</b> Pat Marion<br>
<b>Cc:</b> paraview@paraview.org<br>
<b>Subject:</b> [EXTERNAL] Re: [Paraview] python scripting<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-left:.5in">I just realized that paraview is using a different python (2.5) on my system than the default one (2.7) which has numpy. Also, the paraview I got is a compiled binary of 3.14. How do I go about pointing paraview
to python2.7.<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in">Also, form running the saved trace using python, it looks like it cannot load some of the paraview modules even though I can see them in the paraview directory. Any help?<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:0in;margin-right:0in;margin-bottom:12.0pt;margin-left:.5in">
Regards <o:p></o:p></p>
<div>
<p class="MsoNormal" style="margin-left:.5in">On Fri, Mar 22, 2013 at 12:17 AM, Chukwudi Chukwudozie <<a href="mailto:cchukw1@tigers.lsu.edu" target="_blank">cchukw1@tigers.lsu.edu</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in">Hi,<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-left:.5in">So I got python2.7 working and I set all the variables correctly like you advised but I still get errors. When I try to run a saved trace using python, I get the following errors.<o:p></o:p></p>
</div>
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<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in">b8-8d-12-38-84-40:Python chukwudichukwudozie$ python trace.py <o:p></o:p></p>
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<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">Traceback (most recent call last):<o:p></o:p></p>
</div>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> File "trace.py", line 2, in <module><o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> except: from paraview.simple import *<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> File "/Applications/ParaView.app/Contents/Python/paraview/simple.py", line 39, in <module><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"> import servermanager<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> File "/Applications/ParaView.app/Contents/Python/paraview/servermanager.py", line 43, in <module><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"> import paraview, re, os, os.path, new, sys, vtk<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> File "/Applications/ParaView.app/Contents/Python/paraview/vtk/__init__.py", line 1, in <module><o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> from vtkCommonPython import *<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in">ImportError: dlopen(/Applications/ParaView.app/Contents/Libraries/vtkCommonPython.so, 2): Library not loaded: @executable_path/../Libraries/libvtkCommonPythonD.pv3.14.dylib<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> Referenced from: /Applications/ParaView.app/Contents/Libraries/vtkCommonPython.so<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> Reason: image not found<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-left:.5in">Also, when I try to use pvpython to run a simple script to plot graph, I get the error message below<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">b8-8d-12-38-84-40:Python chukwudichukwudozie$ pvpython plot.py <o:p></o:p></p>
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<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">Traceback (most recent call last):<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal" style="margin-left:.5in"> File "plot.py", line 2, in <module><o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> import numpy as np<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> File "/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy/__init__.py", line 130, in <module><o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> import add_newdocs<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> File "/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy/add_newdocs.py", line 9, in <module><o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> from lib import add_newdoc<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> File "/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy/lib/__init__.py", line 152, in <module><o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> from type_check import *<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> File "/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy/lib/type_check.py", line 8, in <module><o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> import numpy.core.numeric as _nx<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> File "/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy/core/__init__.py", line 5, in <module><o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> import multiarray<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in">ImportError: dlopen(/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy/core/multiarray.so, 2): no suitable image found. Did find:<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in">/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy/core/multiarray.so: mach-o, but wrong architecture<o:p></o:p></p>
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</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in">Thanks.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">On Sun, Mar 17, 2013 at 6:43 PM, Pat Marion <<a href="mailto:pat.marion@kitware.com" target="_blank">pat.marion@kitware.com</a>> wrote:<o:p></o:p></p>
</div>
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<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-right:0in">
<p class="MsoNormal" style="mso-margin-top-alt:0in;margin-right:0in;margin-bottom:12.0pt;margin-left:.5in">
For PYTHONPATH, try removing the last /paraview components from the path, so you're setting: /Applications/ParaView.app/Contents/Python
<br>
<br>
Also add /Applications/ParaView.app/Contents/Libraries to PYTHONPATH and DYLD_LIBRARY_PATH. Note, that is DYLD not LD. You don't need to add the Contents/bin directory to DYLD_LIBRARY_PATH, and you don't need to add DYLD_LIBRARY_PATH to PATH, and you don't
need to add PYTHONPATH to PATH.<br>
<br>
<br>
In summary, ParaView uses both pure python modules and c extension modules. The pure python modules are in Contents/Python, and the c extension modules are in Contents/Libraries. Both these paths should be on PYTHONPATH (or append sys.path at the top of your
main script). The c extenion modules have dependencies on dynamic libraries which are located in Contents/Libraries, so Contents/Libraries this needs to be in the DYLD_LIBRARY_PATH.<br>
<br>
Pat<br>
<br>
<o:p></o:p></p>
<div>
<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">On Sat, Mar 16, 2013 at 12:58 PM, Chukwudi Chukwudozie <<a href="mailto:cchukw1@tigers.lsu.edu" target="_blank">cchukw1@tigers.lsu.edu</a>> wrote:<o:p></o:p></p>
</div>
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<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-right:0in">
<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">Hi, <o:p></o:p></p>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in">I want help to be able to do the following two things using my mac OS X 10.7.5 but I have not been successful.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">1. Run a paraview python script on terminal using pvpython.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">2. Run the same script on terminal using python.<br clear="all">
<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">For (1) above, I saved the trace for a particular operation and ran it using pvpython and it worked. However, I got a paraview python scripts (newscript.py) on the internet and when I try to run them on my terminal
using pvpython, it aborts with the error below.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">Traceback (most recent call last):<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"> File "newscript.py", line 3, in <module><o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> Connect()<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> File "/Applications/ParaView.app/Contents/Python/paraview/servermanager.py", line 1932, in Connect<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"> connection = Connection(id, session)<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"> File "/Applications/ParaView.app/Contents/Python/paraview/servermanager.py", line 1806, in __init__<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> raise RuntimeError, "Concurrent connections not supported!"<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in">RuntimeError: Concurrent connections not supported!<o:p></o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-left:.5in">For (2) above, I tried to run on my terminal using system python, the saved trace (newparaview.py) that was successful with pvpython and it keeps aborting with the following error messages<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
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<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">Traceback (most recent call last):<o:p></o:p></p>
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<div>
<p class="MsoNormal" style="margin-left:.5in"> File "newparaview.py", line 2, in <module><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"> from paraview.servermanager import *<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">ImportError: No module named paraview.servermanager<o:p></o:p></p>
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</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">My .bash_profile file looks like this.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<div>
<p class="MsoNormal" style="margin-left:.5in">export LD_LIBRARY_PATH=/Applications/ParaView.app/Contents/bin<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">export PATH=$PATH:${LD_LIBRARY_PATH}<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">export PYTHONPATH=$PYTHONPATH:/Applications/ParaView.app/Contents/Python/paraview:/Applications/ParaView.app/Contents/bin<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">export PATH=$PATH:{$PYTHONPATH}<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"># Setting PATH for EPD_free-7.2-2<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"># The orginal version is saved in .bash_profile.pysave<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">PATH="/Library/Frameworks/Python.framework/Versions/Current/bin:${PATH}"<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">export PATH<o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in">Regards,<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><span style="color:#888888"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><span style="color:#888888"><o:p> </o:p></span></p>
</div>
<p class="MsoNormal" style="margin-left:.5in"><span style="color:#888888">-- <br>
Chukwudi Chukwudozie <br>
<a href="mailto:cchukw1@tigers.lsu.edu" target="_blank">cchukw1@tigers.lsu.edu</a><br>
Craft and Hawkins Department of Petroleum Engineering<br>
Louisiana State University<br>
Patrick F. Taylor Hall (CEBA)<br>
Room 3429<br>
Baton Rouge LA, 70803<br>
Cell:<a href="tel:3373546822" target="_blank">3373546822</a><br>
Office: <a href="tel:2255786064" target="_blank">2255786064</a> </span><o:p></o:p></p>
</div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:0in;margin-right:0in;margin-bottom:12.0pt;margin-left:.5in">
_______________________________________________<br>
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Visit other Kitware open-source projects at <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">
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<br>
Please keep messages on-topic and check the ParaView Wiki at: <a href="http://paraview.org/Wiki/ParaView" target="_blank">
http://paraview.org/Wiki/ParaView</a><br>
<br>
Follow this link to subscribe/unsubscribe:<br>
<a href="http://www.paraview.org/mailman/listinfo/paraview" target="_blank">http://www.paraview.org/mailman/listinfo/paraview</a><o:p></o:p></p>
</blockquote>
</div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</blockquote>
</div>
</div>
</div>
<div>
<div>
<p class="MsoNormal" style="margin-left:.5in"><br>
<br clear="all">
<o:p></o:p></p>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<p class="MsoNormal" style="margin-left:.5in">-- <br>
Chukwudi Chukwudozie <br>
<a href="mailto:cchukw1@tigers.lsu.edu" target="_blank">cchukw1@tigers.lsu.edu</a><br>
Craft and Hawkins Department of Petroleum Engineering<br>
Louisiana State University<br>
Patrick F. Taylor Hall (CEBA)<br>
Room 3429<br>
Baton Rouge LA, 70803<br>
Cell:<a href="tel:3373546822" target="_blank">3373546822</a><br>
Office: <a href="tel:2255786064" target="_blank">2255786064</a> <o:p></o:p></p>
</div>
</div>
</div>
<p class="MsoNormal" style="margin-left:.5in"><br>
<br clear="all">
<o:p></o:p></p>
<div>
<p class="MsoNormal" style="margin-left:.5in"><o:p> </o:p></p>
</div>
<p class="MsoNormal" style="margin-left:.5in">-- <br>
Chukwudi Chukwudozie <br>
<a href="mailto:cchukw1@tigers.lsu.edu">cchukw1@tigers.lsu.edu</a><br>
Craft and Hawkins Department of Petroleum Engineering<br>
Louisiana State University<br>
Patrick F. Taylor Hall (CEBA)<br>
Room 3429<br>
Baton Rouge LA, 70803<br>
Cell:3373546822<br>
Office: 2255786064 <o:p></o:p></p>
</div>
</div>
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