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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">So coprocessing will not be built using the below instructions? I would have mentioned that, but coprocessing appears to still be part of a regular, non-cross-compile
build, so I figured it was part of ENABLE_paraview<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Also, for the below configcross.sh, do we need to pass in a CMake variable telling it where the tools build dir is located?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Mark<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> David E DeMarle [mailto:dave.demarle@kitware.com]
<br>
<b>Sent:</b> Thursday, August 29, 2013 1:41 PM<br>
<b>To:</b> Hong Yi<br>
<b>Cc:</b> Vanmoer, Mark W; paraview@paraview.org<br>
<b>Subject:</b> Re: [Paraview] Building on Titan using ParaViewSuperbuild<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Thu, Aug 29, 2013 at 2:13 PM, Hong Yi <<a href="mailto:hongyi@renci.org" target="_blank">hongyi@renci.org</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Hi David,<br>
<br>
I just started to try superbuild on Titan also. I don't see you set ENABLE_MPI to be true in your configure script. Could you confirm whether ENABLE_MPI needs to be set to TRUE in order for ParaView to run on Titan in parallel? Since my purpose is to link our<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">The ENABLE_MPI flag at the Superbuild level is unrelated. It has a purpose only when CROSS_BUILD_STAGE=HOST, that is when making ParaView binary installers for desktops from Superbuild. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">You shouldn't turn it on in the TOOLS or CROSS stages. Instead let the CROSS stage use the system installed MPI. It does that by turning PARAVIEW_USE_MPI=ON when it configures the ParaView sub-build. See CMake/crosscompile/xk7_gnu to see
where it does that, and to see the other flags it uses.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">simulation code (already built statically with CMake on Titan) to ParaView CoProcessing libraries (I am using version 3.98.1) for in-situ visualization on Titan, so in this
case, do I have to set ENABLE_paraview to true and do I need to enable OSMesa for ParaView to resort to off-screen rendering for in-situ visualization?
<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">The CROSS stage turns on Python, Mesa and ParaView. Titan's accelerators don't really run X11, so Mesa is the only option for rendering there.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Although I can build ParaView from source on Titan login nodes, I am not able to run it on compute nodes, so I am starting to try superbuild hoping to be able to cross build
ParaView libraries to run in-situ visualization on Titan.<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">I've cross compiled Catalyst itself before on a bluegene. I did it manually before SuperBuild existed. I will see if I can dig up my config scripts. Cross compiling Catalyst should be more or less that same thing as cross compiling ParaView,
but a bit faster and easier because their is less code involved.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Thanks,<br>
Hong<o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-family:"Tahoma","sans-serif";color:black">From:</span></b><span style="font-family:"Tahoma","sans-serif";color:black">
<a href="mailto:paraview-bounces@paraview.org" target="_blank">paraview-bounces@paraview.org</a> [<a href="mailto:paraview-bounces@paraview.org" target="_blank">paraview-bounces@paraview.org</a>] on behalf of David E DeMarle [<a href="mailto:dave.demarle@kitware.com" target="_blank">dave.demarle@kitware.com</a>]<br>
<b>Sent:</b> Thursday, August 29, 2013 1:21 PM<o:p></o:p></span></p>
<div>
<p class="MsoNormal"><span style="font-family:"Tahoma","sans-serif";color:black"><br>
<b>To:</b> Vanmoer, Mark W<br>
<b>Cc:</b> <a href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a><br>
<b>Subject:</b> Re: [Paraview] Building on Titan using ParaViewSuperbuild<o:p></o:p></span></p>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Your tools build is pointing to the compiler wrapper that you normally would use to make code for the back end.
<o:p></o:p></p>
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<p class="MsoNormal">The tools build should just use plain old local gcc since we only build things at that point that run on the login node.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">Try these setup scripts:<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">I source configtools.sh to set up my environment before I build the compile tools, and configcross.sh before before I cross compile ParaView.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<div>
<p class="MsoNormal">configtools.sh<o:p></o:p></p>
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<div>
<div>
<p class="MsoNormal">#use my own cmake, system one is too old<o:p></o:p></p>
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<p class="MsoNormal">setenv PATH /autofs/na4_proj/csc035/demarle/pvdev/titan/cmake-build/bin:${PATH}<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#switch compiler to compile code for front end<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">module unload PrgEnv-pgi<o:p></o:p></p>
</div>
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<p class="MsoNormal">module load gcc<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#configure settings for to build compile tools only<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">cmake \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DCROSS_BUILD_STAGE:STRING=TOOLS -Dcross_target:STRING=xk7_gnu \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DCMAKE_BUILD_TYPE:STRING=Release \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DBUILD_TESTING:BOOL=FALSE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DParaView_FROM_GIT:BOOL=OFF \<o:p></o:p></p>
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<p class="MsoNormal"> -DENABLE_paraview:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DENABLE_boost:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DENABLE_python:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DENABLE_portfwd:BOOL=FALSE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> ../../ParaViewSuperbuild<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
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<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">then make<o:p></o:p></p>
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<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">configcross.sh<o:p></o:p></p>
</div>
<div>
<div>
<p class="MsoNormal">#use my own cmake, system one is too old<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">setenv PATH /autofs/na4_proj/csc035/demarle/pvdev/titan/cmake-build/bin:${PATH}<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#switch compiler to compile code for back end<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">module unload PrgEnv-pgi<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">module unload gcc<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">module load PrgEnv-gnu<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#not sure why module load wasn't sufficient, but ended up needing to force<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#cmake to choose the right compiler<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">setenv CC /opt/cray/xt-asyncpe/5.17/bin/cc<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">setenv CXX /opt/cray/xt-asyncpe/5.17/bin/CC<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">#configure settings to cross compile python, (mesa - implied), and paraview<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">cmake \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DCROSS_BUILD_STAGE:STRING=CROSS -Dcross_target:STRING=xk7_gnu \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DCMAKE_BUILD_TYPE:STRING=Release \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DBUILD_TESTING:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DParaView_FROM_GIT:BOOL=OFF \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DENABLE_paraview:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"> -DENABLE_python:BOOL=TRUE \<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> ../../ParaViewSuperbuild<o:p></o:p></p>
</div>
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<div>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">then make again<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><br clear="all">
<o:p></o:p></p>
<div>
<p class="MsoNormal">David E DeMarle<br>
Kitware, Inc.<br>
R&D Engineer<br>
21 Corporate Drive<br>
Clifton Park, NY 12065-8662<br>
Phone: <a href="tel:518-881-4909" target="_blank">518-881-4909</a><o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
<div>
<p class="MsoNormal">On Tue, Aug 27, 2013 at 4:26 PM, Vanmoer, Mark W <<a href="mailto:mvanmoer@illinois.edu" target="_blank">mvanmoer@illinois.edu</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi, I'm trying to follow the advice on building ParaView on Titan using the ParaViewSuperbuild method from an earlier discussion in June.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">When I run make in the "TOOLS" directory I get the following error:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 66%] Building CXX object Utilities/ProcessXML/CMakeFiles/kwProcessXML.dir/ProcessXML.cxx.o<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Linking CXX executable ../../bin/vtkkwProcessXML-pv4.0<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">/usr/bin/ld: attempted static link of dynamic object `../../lib/libvtkCommonCore-pv4.0.so.1'<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">collect2: error: ld returned 1 exit status<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[6]: *** [bin/vtkkwProcessXML-pv4.0] Error 1<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[5]: *** [Utilities/ProcessXML/CMakeFiles/kwProcessXML.dir/all] Error 2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[4]: *** [CMakeFiles/pvCompileTools.dir/rule] Error 2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[3]: *** [pvCompileTools] Error 2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">CMake Error at /ccs/home/vanmoer/builds/superbuild/tools-build/pv-paraview-build.cmake:26 (message):<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> Failed!!!<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[2]: *** [paraview/src/paraview-stamp/paraview-build] Error 1<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I don't see a BUILD_SHARED that I can toggle. All of the CMAKE_SHARED_LINKER_FLAGS* vars are empty, if those are related.
<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Any suggestions?<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thanks,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Mark<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><br>
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<p class="MsoNormal"><o:p> </o:p></p>
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