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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks very much for the info, David. Turning off MPI4PY for version 3.98 as you suggested works for me to build version 3.98 on Titan also with SuperBuild.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I do want to stick with 4.0, but built 3.98 also just in case since my new plugin works well on version 3.98. After some further examination, it looks like
my plugin should work on version 4.0 also. Have put my plugin code into 4.0 source directory under both tools and cross subdirectories and hope it can be built and work for version 4.0 also.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Have spent this morning trying to figure out how to turn on some additional flags in superbuild such as my new filter plugin, Fortran coprocessing adaptor,
and Phasta adaptor, but cannot succeed. Hope to get some hint on how to do so. Apparently,</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> passing those flags in by adding corresponding –D to configuretools only resulted
in CMake warning indicating those manually-specified variables were not used. Have tried to change some cmake files in superbuild, but does not seem to have any effect. Really appreciate any suggestions you can offer here to turn on those additional flags
which are important for our coprocessing purposes.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hong</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> David E DeMarle [mailto:dave.demarle@kitware.com]
<br>
<b>Sent:</b> Sunday, September 01, 2013 1:56 PM<br>
<b>To:</b> Hong Yi<br>
<b>Cc:</b> Vanmoer, Mark W; paraview@paraview.org<br>
<b>Subject:</b> Re: [Paraview] Building on Titan using ParaViewSuperbuild<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Between 3.98 and 4.0 the syntax of the option to turn off MPI4PY changes like so:<o:p></o:p></p>
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<p class="MsoNormal">I recommend staying with 4.0, but try reverting this change if you need 3.98 for some reason.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">-------------- CMake/crosscompile/xk7_gnu/ParaViewDefaults.cmake --------------<o:p></o:p></p>
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<p class="MsoNormal">index 5835693..68c2bea 100644<o:p></o:p></p>
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<p class="MsoNormal">@@ -3,7 +3,8 @@ list(APPEND PARAVIEW_OPTIONS "-DBUILD_SHARED_LIBS:BOOL=OFF")<o:p></o:p></p>
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<p class="MsoNormal"> list(APPEND PARAVIEW_OPTIONS "-DBUILD_TESTING:BOOL=OFF")<o:p></o:p></p>
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<p class="MsoNormal"> list(APPEND PARAVIEW_OPTIONS "-DPARAVIEW_BUILD_QT_GUI:BOOL=OFF")<o:p></o:p></p>
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<p class="MsoNormal"> #<o:p></o:p></p>
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<p class="MsoNormal">-list(APPEND PARAVIEW_OPTIONS "-DENABLE_MPI4PY:BOOL=OFF")<o:p></o:p></p>
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<p class="MsoNormal">+list(APPEND PARAVIEW_OPTIONS "-DPARAVIEW_USE_SYSTEM_MPI4PY:BOOL=ON")<o:p></o:p></p>
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<p class="MsoNormal">+#<o:p></o:p></p>
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<p class="MsoNormal"> list(APPEND PARAVIEW_OPTIONS "-DPARAVIEW_USE_MPI:BOOL=ON")<o:p></o:p></p>
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<p class="MsoNormal"> #/opt/cray/mpt/5.5.5/gni/mpich2-gnu/47/lib/<o:p></o:p></p>
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<p class="MsoNormal"> #libmpich.a <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><br clear="all">
<o:p></o:p></p>
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<p class="MsoNormal">David E DeMarle<br>
Kitware, Inc.<br>
R&D Engineer<br>
21 Corporate Drive<br>
Clifton Park, NY 12065-8662<br>
Phone: 518-881-4909<o:p></o:p></p>
</div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
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<p class="MsoNormal">On Sat, Aug 31, 2013 at 4:10 PM, Hong Yi <<a href="mailto:hongyi@renci.org" target="_blank">hongyi@renci.org</a>> wrote:<o:p></o:p></p>
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<div>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Just a quick update. Like Mark, I can build ParaView 4.0.1 with Superbuild successfully without issues using CMake 2.8.11.2 on Titan. However, I cannot build Paraview 3.98.1
with Superbuild using the same CMake version. I still got the same linking error from mpi4py.MPI.c in the final stage of linking after 100% built for the cross stage (see below for details) if I built version 3.98.1 using superbuild. Perhaps the latest version
of Superbuild has some sort of incompatibility with the older version of ParaView for xk7_gnu target? Anyway, looks like we have to go with the latest ParaView version for in-situ visualization on Titan since superbuild does not work with older 3.98.1 version
for us, which may very well prove a good thing for us in the long run due to a lot of improvement made on Catalyst in the latest ParaView version.
<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Thanks,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Hong<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> <o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-family:"Tahoma","sans-serif";color:black">From:</span></b><span style="font-family:"Tahoma","sans-serif";color:black">
<a href="mailto:paraview-bounces@paraview.org" target="_blank">paraview-bounces@paraview.org</a> [<a href="mailto:paraview-bounces@paraview.org" target="_blank">paraview-bounces@paraview.org</a>] on behalf of Hong Yi [<a href="mailto:hongyi@renci.org" target="_blank">hongyi@renci.org</a>]<br>
<b>Sent:</b> Friday, August 30, 2013 5:43 PM<br>
<b>To:</b> Vanmoer, Mark W; David E DeMarle<br>
<b>Cc:</b> <a href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a><o:p></o:p></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-family:"Tahoma","sans-serif";color:black"><br>
<b>Subject:</b> Re: [Paraview] Building on Titan using ParaViewSuperbuild<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<div>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks for the info, Mark. Looks like it is sensible for me to try newer version of CMake 2.8.11.2
and see how it goes.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">On a somewhat related question: I am trying to pass in some CMake flags to make it build my new filter
plugin as well as FortranAdaptor for coprocessing (yes, I discovered also that coprocessing/catalyst is built by default by superbuild, but FortranAdaptor is turned off by default). I tried to pass it in by adding corresponding –D to configuretools, but got
CMake warning as well indicating those manually-specified variables were not used. I am wondering whether I can do it by directly changing CMakeCache.txt under paraview/src/paraview-build to force the corresponding flags to be on…</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hong</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
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<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Vanmoer, Mark W [mailto:<a href="mailto:mvanmoer@illinois.edu" target="_blank">mvanmoer@illinois.edu</a>]
<br>
<b>Sent:</b> Friday, August 30, 2013 5:34 PM<br>
<b>To:</b> Hong Yi; David E DeMarle<br>
<b>Cc:</b> <a href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a><br>
<b>Subject:</b> RE: [Paraview] Building on Titan using ParaViewSuperbuild</span><o:p></o:p></p>
</div>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hi Hong,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I was able to get David’s instructions to work using CMake 2.8.11.2 and ParaView 4.0.1. The build
process seems to be sensitive to versions.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Mark
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<div style="border:none;border-left:solid blue 1.5pt;padding:0in 0in 0in 4.0pt">
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Hong Yi [<a href="mailto:hongyi@renci.org" target="_blank">mailto:hongyi@renci.org</a>]
<br>
<b>Sent:</b> Friday, August 30, 2013 3:52 PM<br>
<b>To:</b> David E DeMarle; Vanmoer, Mark W<br>
<b>Cc:</b> <a href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a><br>
<b>Subject:</b> RE: [Paraview] Building on Titan using ParaViewSuperbuild</span><o:p></o:p></p>
</div>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">I tried to follow the instructions and the configuration scripts to build ParaView for compute nodes on Titan. It built
successfully without issues for the TOOLS stage, but when doing final linking for paraview in the CROSS stage, I got numerous similar linking error from different lines such as the following:<br>
<br>
----------------<br>
/....../ParaView/ParaViewSuperbuild/cross/paraview/src/paraview/Utilities/mpi4py/src/mpi4py.MPI.c: In function '__pyx_pf_6mpi4py_3MPI_4File_54Sync':<br>
/....../ParaView/ParaViewSuperbuild/cross/paraview/src/paraview/Utilities/mpi4py/src/mpi4py.MPI.c:89682:7: error: '_save' undeclared (first use in this function)<br>
----------------<br>
<br>
The same error message were raised from the same file mpi4py.MPI.c from different lines.<br>
<br>
I am using CMake version 2.8.10.2 which is provided by Titan, and using the ParaView source tree version 3.98 with one additional filter I have developed.<br>
<br>
Any idea on what could cause the linking error?<br>
<br>
Thanks,<br>
Hong </span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> David E DeMarle [<a href="mailto:dave.demarle@kitware.com" target="_blank">dave.demarle@kitware.com</a>]<br>
<b>Sent:</b> Thursday, August 29, 2013 4:08 PM<br>
<b>To:</b> Vanmoer, Mark W<br>
<b>Cc:</b> Hong Yi; <a href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a><br>
<b>Subject:</b> Re: [Paraview] Building on Titan using ParaViewSuperbuild</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On Thu, Aug 29, 2013 at 3:51 PM, Vanmoer, Mark W <<a href="mailto:mvanmoer@illinois.edu" target="_blank">mvanmoer@illinois.edu</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">So coprocessing will not be built using the below instructions? I would have mentioned that, but
coprocessing appears to</span><o:p></o:p></p>
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<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">still be part of a regular, non-cross-compile build, so I figured it was part of ENABLE_paraview </span><o:p></o:p></p>
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</blockquote>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The coprocessing plugin, which adds things to the GUI to make it easy to record coprocessing pipeline setups doesn't need to be turned on since that lives in the client only. (It
is like python trace or state recording, but tailored to recording in-situ setups).<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Catalyst (the stripped down version of ParaView server that a simulation code can link to and use to run those recorded pipelines quickly) is not yet an option in ParaViewSuperbuild.
To cross compile Catalyst a bit more work will be required. It will follow the same plan as how the ParaView server is compiled, but I just haven't tried it. When I did cross compile Catalyst last year at this time I did the same steps that ParaViewSuperbuild's
TOOLS and CROSS build passes did, just by hand.<o:p></o:p></p>
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<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Also, for the below configcross.sh, do we need to pass in a CMake variable telling it where the tools
build dir is located?</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">That should be an option that you can easily set, but it isn't sorry.<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> CMake/CrossCompilationMacros.cmake assumes it can find it one directory up and over like so:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">macro(find_hosttools)<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> set(PARAVIEW_HOSTTOOLS_DIR ${CMAKE_BINARY_DIR}/../tools/paraview/src/paraview-build/ CACHE PATH<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> "Location of host built paraview compile tools directory")<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> set(PYTHON_HOST_EXE ${CMAKE_BINARY_DIR}/../tools/install/bin/python CACHE PATH<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> "Location of host built python executable")<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> set(PYTHON_HOST_LIBDIR ${CMAKE_BINARY_DIR}/../tools/install/lib CACHE PATH<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> "Location of host built python libraries")<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> set(BOOST_HOST_INCLUDEDIR ${CMAKE_BINARY_DIR}/../tools/install/include CACHE PATH<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> "Location of host built boost headers")<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">endmacro()<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">You could predefine all four of those if you like.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
</div>
<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Mark</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
<div style="border:none;border-left:solid blue 1.5pt;padding:0in 0in 0in 4.0pt">
<div>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> David E DeMarle [mailto:<a href="mailto:dave.demarle@kitware.com" target="_blank">dave.demarle@kitware.com</a>]
<br>
<b>Sent:</b> Thursday, August 29, 2013 1:41 PM<br>
<b>To:</b> Hong Yi<br>
<b>Cc:</b> Vanmoer, Mark W; <a href="mailto:paraview@paraview.org" target="_blank">
paraview@paraview.org</a></span><o:p></o:p></p>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br>
<b>Subject:</b> Re: [Paraview] Building on Titan using ParaViewSuperbuild<o:p></o:p></p>
</div>
</div>
</div>
</div>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<div>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On Thu, Aug 29, 2013 at 2:13 PM, Hong Yi <<a href="mailto:hongyi@renci.org" target="_blank">hongyi@renci.org</a>> wrote:<o:p></o:p></p>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Hi David,<br>
<br>
I just started to try superbuild on Titan also. I don't see you set ENABLE_MPI to be true in your configure script. Could you confirm whether ENABLE_MPI needs to be set to TRUE in order for ParaView to run on Titan in parallel? Since my purpose is to link our</span><o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The ENABLE_MPI flag at the Superbuild level is unrelated. It has a purpose only when CROSS_BUILD_STAGE=HOST, that is when making ParaView binary installers for desktops from Superbuild. <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">You shouldn't turn it on in the TOOLS or CROSS stages. Instead let the CROSS stage use the system installed MPI. It does that by turning PARAVIEW_USE_MPI=ON when it configures the
ParaView sub-build. See CMake/crosscompile/xk7_gnu to see where it does that, and to see the other flags it uses.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">simulation code (already built statically with CMake on Titan) to ParaView CoProcessing libraries (I am using version
3.98.1) for in-situ visualization on Titan, so in this case, do I have to set ENABLE_paraview to true and do I need to enable OSMesa for ParaView to resort to off-screen rendering for in-situ visualization?
</span><o:p></o:p></p>
</div>
</div>
</blockquote>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The CROSS stage turns on Python, Mesa and ParaView. Titan's accelerators don't really run X11, so Mesa is the only option for rendering there.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Although I can build ParaView from source on Titan login nodes, I am not able to run it on compute nodes, so I am
starting to try superbuild hoping to be able to cross build ParaView libraries to run in-situ visualization on Titan.</span><o:p></o:p></p>
</div>
</div>
</blockquote>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I've cross compiled Catalyst itself before on a bluegene. I did it manually before SuperBuild existed. I will see if I can dig up my config scripts. Cross compiling Catalyst should
be more or less that same thing as cross compiling ParaView, but a bit faster and easier because their is less code involved.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Thanks,<br>
Hong</span><o:p></o:p></p>
<div>
<div class="MsoNormal" align="center" style="text-align:center">
<hr size="2" width="100%" align="center">
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-family:"Tahoma","sans-serif"">
<a href="mailto:paraview-bounces@paraview.org" target="_blank">paraview-bounces@paraview.org</a> [<a href="mailto:paraview-bounces@paraview.org" target="_blank">paraview-bounces@paraview.org</a>] on behalf of David E DeMarle [<a href="mailto:dave.demarle@kitware.com" target="_blank">dave.demarle@kitware.com</a>]<br>
<b>Sent:</b> Thursday, August 29, 2013 1:21 PM</span><o:p></o:p></p>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-family:"Tahoma","sans-serif""><br>
<b>To:</b> Vanmoer, Mark W<br>
<b>Cc:</b> <a href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a><br>
<b>Subject:</b> Re: [Paraview] Building on Titan using ParaViewSuperbuild</span><o:p></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<div>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Your tools build is pointing to the compiler wrapper that you normally would use to make code for the back end.
<o:p></o:p></p>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The tools build should just use plain old local gcc since we only build things at that point that run on the login node.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Try these setup scripts:<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I source configtools.sh to set up my environment before I build the compile tools, and configcross.sh before before I cross compile ParaView.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">configtools.sh<o:p></o:p></p>
</div>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#use my own cmake, system one is too old<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">setenv PATH /autofs/na4_proj/csc035/demarle/pvdev/titan/cmake-build/bin:${PATH}<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#switch compiler to compile code for front end<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">module unload PrgEnv-pgi<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">module load gcc<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#configure settings for to build compile tools only<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">cmake \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DCROSS_BUILD_STAGE:STRING=TOOLS -Dcross_target:STRING=xk7_gnu \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DCMAKE_BUILD_TYPE:STRING=Release \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DBUILD_TESTING:BOOL=FALSE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DParaView_FROM_GIT:BOOL=OFF \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DENABLE_paraview:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DENABLE_boost:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DENABLE_python:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DENABLE_portfwd:BOOL=FALSE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> ../../ParaViewSuperbuild<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">then make<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">configcross.sh<o:p></o:p></p>
</div>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#use my own cmake, system one is too old<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">setenv PATH /autofs/na4_proj/csc035/demarle/pvdev/titan/cmake-build/bin:${PATH}<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#switch compiler to compile code for back end<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">module unload PrgEnv-pgi<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">module unload gcc<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">module load PrgEnv-gnu<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#not sure why module load wasn't sufficient, but ended up needing to force<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#cmake to choose the right compiler<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">setenv CC /opt/cray/xt-asyncpe/5.17/bin/cc<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">setenv CXX /opt/cray/xt-asyncpe/5.17/bin/CC<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#configure settings to cross compile python, (mesa - implied), and paraview<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">cmake \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DCROSS_BUILD_STAGE:STRING=CROSS -Dcross_target:STRING=xk7_gnu \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DCMAKE_BUILD_TYPE:STRING=Release \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DBUILD_TESTING:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DParaView_FROM_GIT:BOOL=OFF \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DENABLE_paraview:BOOL=TRUE \<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -DENABLE_python:BOOL=TRUE \<o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> ../../ParaViewSuperbuild<o:p></o:p></p>
</div>
</div>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">then make again<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br clear="all">
<o:p></o:p></p>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">David E DeMarle<br>
Kitware, Inc.<br>
R&D Engineer<br>
21 Corporate Drive<br>
Clifton Park, NY 12065-8662<br>
Phone: <a href="tel:518-881-4909" target="_blank">518-881-4909</a><o:p></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"> <o:p></o:p></p>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On Tue, Aug 27, 2013 at 4:26 PM, Vanmoer, Mark W <<a href="mailto:mvanmoer@illinois.edu" target="_blank">mvanmoer@illinois.edu</a>> wrote:<o:p></o:p></p>
<div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi, I'm trying to follow the advice on building ParaView on Titan using the ParaViewSuperbuild method from an earlier discussion in June.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">When I run make in the "TOOLS" directory I get the following error:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 66%] Building CXX object Utilities/ProcessXML/CMakeFiles/kwProcessXML.dir/ProcessXML.cxx.o<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Linking CXX executable ../../bin/vtkkwProcessXML-pv4.0<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">/usr/bin/ld: attempted static link of dynamic object `../../lib/libvtkCommonCore-pv4.0.so.1'<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">collect2: error: ld returned 1 exit status<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[6]: *** [bin/vtkkwProcessXML-pv4.0] Error 1<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[5]: *** [Utilities/ProcessXML/CMakeFiles/kwProcessXML.dir/all] Error 2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[4]: *** [CMakeFiles/pvCompileTools.dir/rule] Error 2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[3]: *** [pvCompileTools] Error 2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">CMake Error at /ccs/home/vanmoer/builds/superbuild/tools-build/pv-paraview-build.cmake:26 (message):<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> Failed!!!<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[2]: *** [paraview/src/paraview-stamp/paraview-build] Error 1<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I don't see a BUILD_SHARED that I can toggle. All of the CMAKE_SHARED_LINKER_FLAGS* vars are empty, if those are related.
<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Any suggestions?<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thanks,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Mark<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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