MantisBT - ParaView |
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| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0012970 | ParaView | (No Category) | public | 2012-02-29 14:16 | 2012-07-25 20:09 |
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| Reporter | Orion Poplawski | |
| Assigned To | Dave DeMarle | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | closed | Resolution | fixed | |
| Platform | | OS | | OS Version | |
| Product Version | | |
| Target Version | 3.14.1 | Fixed in Version | 3.14.1 | |
| Project | TBD |
| Topic Name | 0012790-netcdf4-with-system-hdf5 |
| Type | feature |
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| Summary | 0012970: No way to use netcdf4 with system netcdf |
| Description | There appears to be no way to set USE_NETCDF4=ON when using the system netcdf libraries. I also see the following:
ENABLE_NETCDF4 not allowed because netcdf4 functionality requires HDF5_BUILD_HL_LIB.
Though I'm not explicitly setting ENABLE_NETCDF4. I'm using system versions of hdf5 and netcdf4. |
| Steps To Reproduce | |
| Additional Information | |
| Tags | No tags attached. |
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| Attached Files | |
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| Issue History |
| Date Modified | Username | Field | Change |
| 2012-02-29 14:16 | Orion Poplawski | New Issue | |
| 2012-02-29 14:25 | Dave DeMarle | Note Added: 0028330 | |
| 2012-02-29 15:19 | Orion Poplawski | Note Added: 0028331 | |
| 2012-02-29 15:22 | Dave DeMarle | Assigned To | => Dave DeMarle |
| 2012-02-29 15:22 | Dave DeMarle | Status | backlog => tabled |
| 2012-03-05 13:17 | Utkarsh Ayachit | Project | VTK => ParaView |
| 2012-03-05 13:18 | Utkarsh Ayachit | Status | tabled => todo |
| 2012-03-05 13:18 | Utkarsh Ayachit | Product Version | 5.8.0 => |
| 2012-03-05 13:18 | Utkarsh Ayachit | Target Version | => 3.14.1 |
| 2012-03-21 10:43 | Dave DeMarle | Status | todo => active development |
| 2012-03-21 10:49 | Dave DeMarle | Topic Name | => 001279-netcdf4-with-system-hdf5 |
| 2012-03-21 10:49 | Dave DeMarle | Note Added: 0028380 | |
| 2012-03-21 10:49 | Dave DeMarle | Status | active development => gatekeeper review |
| 2012-03-21 10:49 | Dave DeMarle | Fixed in Version | => git-next |
| 2012-03-21 10:49 | Dave DeMarle | Resolution | open => fixed |
| 2012-03-21 14:47 | Orion Poplawski | Note Added: 0028381 | |
| 2012-03-21 14:52 | Dave DeMarle | Note Added: 0028382 | |
| 2012-03-21 15:07 | Orion Poplawski | Note Added: 0028383 | |
| 2012-03-22 11:41 | Dave DeMarle | Note Added: 0028384 | |
| 2012-03-23 11:44 | Orion Poplawski | Note Added: 0028388 | |
| 2012-03-26 10:28 | Utkarsh Ayachit | Fixed in Version | git-next => git-master |
| 2012-03-26 10:28 | Utkarsh Ayachit | Status | gatekeeper review => customer review |
| 2012-03-26 10:43 | Utkarsh Ayachit | Topic Name | 001279-netcdf4-with-system-hdf5 => 0012790-netcdf4-with-system-hdf5 |
| 2012-04-05 17:03 | Utkarsh Ayachit | Fixed in Version | git-master => 3.14.1 |
| 2012-07-25 20:09 | Alan Scott | Note Added: 0028939 | |
| 2012-07-25 20:09 | Alan Scott | Status | customer review => closed |
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Notes |
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(0028330)
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Dave DeMarle
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2012-02-29 14:25
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The message:
ENABLE_NETCDF4 not allowed because netcdf4 functionality requires HDF5_BUILD_HL_LIB.
is expected.
It just means that until your system HDF5 has this flag set, you won't be able to use the new (to us) parts of netcdf that use hdf5. Instead you get the old (netcdf3) behavior we've had for years.
Try turning HDF5_BUILD_HL_LIB on in your system hdf5, and report on the bug if it still doesn't work. |
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(0028331)
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Orion Poplawski
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2012-02-29 15:19
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HDF5_BUILD_HL_LIB is a VTKism, hdf5 does not define this. Our system hdf5 does have the _hl library. |
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(0028380)
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Dave DeMarle
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2012-03-21 10:49
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fixed vtknetcdf's cmakelists to recognize external hdf5's hl lib
fixed paraview superbuild to turn on hl lib and use it
tested paraview with vtkhdf5, system hdf5 from macports, and the superbuild built hdf5
all could open the exodus on hdf5 file I have access to
for system hdf5, I started my cmakecache with
VTK_USE_SYSTEM_HDF5:BOOL=ON
HDF5_INCLUDE_DIR:PATH:/opt/local/include.
I suspect on other platforms it will be similar. |
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(0028381)
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Orion Poplawski
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2012-03-21 14:47
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Is this in git master? Can't any changes to vtknetcdf/CMakeLists.txt. |
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(0028382)
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Dave DeMarle
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2012-03-21 14:52
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It's only in the next branch until Friday when the next gatekeeper review happens.
It is in VTK master and release branches if you want to try the VTK level out. |
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(0028383)
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Orion Poplawski
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2012-03-21 15:07
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Hmm, getting:
[orion@orca ParaView (next *)]$ git submodule update
fatal: reference is not a tree: d673341b51ab8e4fdbabf3accd1c494f70a10513
Unable to checkout 'd673341b51ab8e4fdbabf3accd1c494f70a10513' in submodule path 'VTK'
[orion@orca ParaView (next *)]$ git diff
diff --git a/VTK b/VTK
index d673341..b327915 160000
--- a/VTK
+++ b/VTK
@@ -1 +1 @@
-Subproject commit d673341b51ab8e4fdbabf3accd1c494f70a10513
+Subproject commit b327915a5ae65f3747e2d84619ad4cf522511b8b |
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(0028384)
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Dave DeMarle
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2012-03-22 11:41
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I think your checkout of ParaView only has the VTK remote and needs the PVVTK remote.
The VTK one is sufficient for the master branch since pvvtk changes get merged there when they are
fully cooked.
For the next branch, you need the PVVTK remote, which is where ParaView's vtk changes live until they get promoted to VTK proper.
cd VTK
git remote add pvvtk git://paraview.org/PVVTK.git [^]
git fetch pvvtk
cd ..
git submodule update |
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(0028388)
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Orion Poplawski
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2012-03-23 11:44
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Okay, that looks pretty good, though I suspect from the following you end up overlinking:
-- Found HDF5: debug;/usr/lib64/libhdf5_hl.so;debug;/usr/lib64/libhdf5.so;debug;/usr/lib64/libz.so;debug;/usr/lib64/librt.so;debug;/usr/lib64/libm.so;optimized;/usr/lib64/libhdf5_hl.so;optimized;/usr/lib64/libhdf5.so;optimized;/usr/lib64/libz.so;optimized;/usr/lib64/librt.so;optimized;/usr/lib64/libm.so
Thanks! |
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(0028939)
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Alan Scott
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2012-07-25 20:09
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User stated it is fixed. Closed. |
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