View source for TubeTK/Events/2010.09.28

== Danielle ==
* Derived mathematical foundations for sliding organ registration work
* Learned ITK's finite differences classes, + Andinet's anisotropic diffusion implementation
* Read "An investigation of smoothness constraints for the estimation of displacement vector fields from image sequences", Nagel et al. 1986
* Worked out framework for registering Ryan's vessel data - extract .tre from .txt gold standard motion field, and register to image
* Added small test in TubeTK to convert a .tre to an image, given an example image
* Initial manual registration for Ryan's 'healthy' dataset
* Fixing up style/comment issues in TubeTK as encountered
* TODO: run Ryan's vessels through Hua's registration test


== Romain ==
*  Read Measuring Tortuosity of the Intracerebral Vasculature from MRA Images
* Filtering all Ryan's data using different iterations
* Preliminary results from tumor microenvironment segmentation
* Learning more Python
* ImageJ processing
* Future
** Learning python execution model of Slicer
*** http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation:Python
** Reviewing papers from Dr. Bullitt on tortuosity

== Stephen ==
* USC
** JointHistogram computation time reduced by 75%
** ComputeContrastImage: still not converging :(
** Pursuing additional funding
** Presentation tomorrow: Pseudo-EM, Contrast Image
* BWH
** SubK still not cut.  Over 1 month at BWH.  :(
** No word from BrainLAB.   Time to pursue alternative
* TubeTK
** Fixed failing tests.  2 remain
** How integrate with slicer: vtkGeometry?
*** [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#XML_Schema <geometry>]
** QtImageViewer (Ben checking-in)
** RidgeExtractor: File IO issues

[[Category:TubeTK Events and Meetings|2010.09.28]]