ITK/Course Georgetown 2005

ITK intensive course

Organization

Imaging Science and Information Systems (ISIS) Center

Department of Radiology

Georgetown University Medical Center,

http://www.isis.georgetown.edu/

November 8-9, 2005

Context

ITK is an open-source software toolkit for performing registration and segmentation. ITK is implemented in C++. ITK is cross-platform, using the CMake build environment to manage the configuration process. In addition, an automated wrapping process generates interfaces between C++ and interpreted programming languages such as Tcl, Java, and Python. This enables developers to create software using a variety of programming languages. ITK's C++ implementation style is referred to as generic programming (i.e., using templated code). Such C++ templating means that the code is highly efficient, reusable, and that many software problems are discovered at compile-time, rather than at run-time during program execution. Because ITK is an open-source project, developers from around the world can use, debug, maintain, and extend the software. ITK uses a model of software development referred to as extreme programming. Extreme programming collapses the usual software creation methodology into a simultaneous and iterative process of design-implement-test-release

Objectives of the course

This intensive course aims both at giving a brief introduction to ITK for new and potential users, as well as in-depth details on advanced ITK programming for ITK developers. Moreover, a special session will be dedicated to the link between ITK and different medical image viewers. The course will include plenary presentation by specialists from Kitware Inc. (http://www.kitware.com) as well as hands-on exercises on real, practical problems in medical imaging.

Organization

The course is organised by

 Dr. Kevin Cleary
 Imaging Science and Information Systems (ISIS) Center
 Department of Radiology
 Georgetown University Medical Center

http://www.isis.georgetown.edu/

in collaboration with Kitware Inc.

http://www.kitware.com/

Instructors

Instructors will be

• Luis Ibanez, Kitware Inc,
• Andinet Enquobahrie, Kitware Inc,
• Julien Jomier, CADDLab UNC

Preliminary program

Preparation

"Those who succeed do so because they have already acted
Those who failed do so because they act too late"

Download the Binary version of CMake 2.2

http://www.cmake.org/HTML/Download.html

You could also download the source and build it on your own, but this is not necessary. Using the binary version should be much simpler.

Download and Build ITK

Download ITK 2.2 following the instructions in

http://www.itk.org/CourseWare/Training/GettingStartedI-WebPage/index.htm

The PowerPoint presentation can also be downloaded from the following link:
GettingStarted-I

and build it in your machine. You can use any of the platforms supported by ITK.

• Microsoft Windows with Visual Studio
• Microsoft Windows with Borland Compiler
• Microsoft Windows with Intel Compiler
• Microsoft Windows with Cygwin
• Linux with Intel Compiler
• Linux with GCC 2.95, 3.0, 3.2 3.3, 3.4, or 4.0
• Macintosh with Gcc
• SGI with CC native compiler
• SGI with GCC
• SUN with CC native compiler
• SUN with GCC

Download and Build the Exercises

The source code of the hands-on exercises is contained in the following zip file.

• File:ITKCourseExercises.tgz
• File:ITKCourseExercises.zip

Please download and build the exercises.

You should build these exercises before attending the course.

In this way the time of the course will be focused on studying the exercises and not in dealing with configuration problems.

Tuesday, November 8th, 2005:

Course Schedule: 9:00am to 5:00pm

• 9:00 - 9:30 Introduction (Luis Ibanez Insight-Overview Slides)
• 9:30 - 10:30 ITK Architecture (Andinet Enquobahrie: Insight-Architecture Slides)
• 10:30 - 12:00 ITK Design Patterns (Luis Ibanez: Insight-DesignPatterns Slides)
• 12:00 - 13:00 Lunch Break
• 13:00 - 14:30 Writing an ITK filter (Andinet Enquobahrie: Insight-Writing-a-New-Filter Slides)
• 14:30 - 15:00 Coffee Break
• 15:00 - 16:30 Multi-Threading (Luis Ibanez: Insight-MultiThreading Slides)
• 16:30 - 17:00 Software Process (Andinet Enquobahrie: Insight-SoftwareProcess Slides)

Wednesday, November 9th, 2005

Course Schedule: 9:00am - 5:00pm

• 9:00 - 10:30 Segmentation (Luis Ibanez: ITK Segmentation Slides)
• 10:30 - 11:00 Coffee Break
• 11:00 - 12:00 Image Registration (Luis Ibanez: ITK Image Registration Slides)
• 12:00 - 13:00 Lunch Break
• 13:00 - 15:00 Deformable Registration (Luis Ibanez)
  • ITK Image Deformable Registration BSplines Slides
  • ITK Image Deformable Registration FEM Slides
  • ITK Image Deformable Registration Demons Slides
• 15:30 - 16:00 Coffee Break
• 16:00 - 17:00 Spatial Objects and Models (Julien Jomier )

Alternative Material

This is material to be presented on request, or if time permits.

• Using ITK with VTK (Luis Ibanez: ITK + VTK Slides)

Venue and accommodation

The course will be held at Georgetown University in Washington DC.

  ISIS Center
  Department of Radiology, 
  Georgetown University Medical Center

  2115 Wisconsin Avenue NW, 
  Suite 603
  Washington, DC 20057
  Tel: (202) 687-5990 
  Fax: (202) 784-3479

  Google Map 

  Yahoo Map 

Registration

Please Note:

• Space is limited therefore early registration is advised.
• Participants must bring their own laptop computer as it is a hands-on course.
• All profits from this course will go to the Insight Software Consortium to support the open source movement.

For questions and registration please contact Katherine Lawyer at kml26@georgetown.edu or 202-687-7193.

Nearby Hotels

Hotel List (listed by prices)

 Holiday Inn
 2101 Wisconsin Ave. N.W.
 Washington, DC 20007
 1-202-338-4600
 $156.66 a night
 http://www.ichotelsgroup.com/h/d/hi/1/en/hd/wasgt?irs=y

 Wyndham Washington, DC
 1400 M Street, Nw
 Washington, DC 20005
 (202) 429-1700
 $184 a night (offer a AAA discount)
 http://www.wyndham.com/hotels/DCAHT/main.wnt

 Westin Grand
 2350 M Street NW
 Washington DC 20037
 202-429-0100
 $219 a night   http://www.starwoodhotels.com/westin/search/hotel_detail.html?requestedChainCode=WI&requestedAffiliationCode=WI&goToRooms=yes&lengthOfStay=1&numberOfRooms=1&numberOfAdults=1&arrivalDate=2005-09-28&departureDate=2005-09-29&rpoi=&propertyID=1013&rcdi=&linkbrand=&fromSearch=22XX&sherlockRatePlanID=&sherlockMiniRate=&sherlockRoomType=&sherlockBedType=&iATANumber=&corporateAccountNumber=&propertyDistance=&propertyDistanceInUnits=&requestType=page&page=&ratePlanName=&roomOccupancyTotal=1

 Westin Embassy Road
 2100 Mass Ave NW
 Washington DC 20008
 (202) 293-2100
 $229 a night
 http://www.starwoodhotels.com/westin/search/hotel_detail.html?requestedChainCode=WI&requestedAffiliationCode=WI&goToRooms=yes&lengthOfStay=3&numberOfRooms=1&numberOfAdults=1&arrivalDate=2005-11-09&departureDate=2005-11-12&rpoi=&propertyID=245&rcdi=&linkbrand=&fromSearch=22XX&sherlockRatePlanID=&sherlockMiniRate=&sherlockRoomType=&sherlockBedType=&iATANumber=&corporateAccountNumber=&propertyDistance=&propertyDistanceInUnits=&requestType=page&page=&ratePlanName=&roomOccupancyTotal=1

 Marriott Georgetown University Conference Center
 3800 Reservoir Road Northwest
 Washington, DC 20057
 1-202-687-3200
 $259 a night for the 9th and 10th,  149 a night for the 11th 
 http://marriott.com/property/propertypage.mi?marshaCode=WASGU

 The Georgetown Inn
 1310 Wisconsin Avenue. N.W.
  Washington, DC 20007
 (202) 424-2979
 $235.67 a night

 The Fairmont Washington
 2401 M Street
 Washington, DC 20007
 (202) 429-2400
 $499 a night
 http://www.fairmont.com/washington/

Often hotels near the Key Bridge are significantly less expensive, so I also included a list of those as well:

 Best Western Key Bridge 
 1850 North Fort Myer Drive, Arlington, VA 22219
 (703)522-0400
 $119.00 per night
 http://book.bestwestern.com/bestwestern/productInfo.do;jsessionid=251A0AE051D6E8759F4E134D2466A25A?propertyCode=47096

 Holiday Inn Rosslyn @Key Bridge, Va
 1900 N. Fort Myer Dr., Arlington, VA 22209
 1-703-8072000
 153.28 a night
 http://www.ichotelsgroup.com/h/d/hi/1/en/hd/waswp?irs=y

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