SimpleITK/ReleaseNotes

SimpleITK - Version 0.8.0 Release

Sub-task

• [SIMPLEITK-391] - Correct overloaded operator to use Bitwise filter for bitwise operators
• [SIMPLEITK-476] - Check if the custom std_vector.i file for R is still needed
• [SIMPLEITK-477] - Latest R installs require a NAMESPACE file

Bug

• [SIMPLEITK-445] - `GLIBC_2.14' not found
• [SIMPLEITK-451] - The C++ Examples are not being tested.
• [SIMPLEITK-453] - CLang 5.0 OS X 10.9 std::tr1 namespace doesn't exist
• [SIMPLEITK-478] - Test Java Command Delegate
• [SIMPLEITK-480] - Automatically add -std=c++11 flag for clang 5.0 on mavericks.
• [SIMPLEITK-482] - Fix CMake configuration warning about linking to ourselves.
• [SIMPLEITK-495] - Update virtualenv version, not compatible with Ubuntu 13.10, or Debian testing
• [SIMPLEITK-496] - On Maverick with c++11 SWIG is failing with Java and std::vector<bool>
• [SIMPLEITK-507] - The Examples in the "Segmentation" sub-directory are not being run and need to be updated.
• [SIMPLEITK-508] - The Python PEP386 version should not have a '.' before the release candidate suffix.

Improvement

• [SIMPLEITK-430] - The InterpolatorEnums are print as integers, this should be strings.
• [SIMPLEITK-431] - The enums for morphology filters are local to each filter, they should be moved to common location with the sitk prefix.
• [SIMPLEITK-432] - upgrade toward ITK 4.5
• [SIMPLEITK-433] - Add Warp ImageFilter
• [SIMPLEITK-434] - Add BinShrink filter
• [SIMPLEITK-436] - Expose the hidden CMake Variable as advanced options.
• [SIMPLEITK-450] - Break compilation of LabelStatisticsImageFilter into 2 file for compilation speed.
• [SIMPLEITK-457] - Add CSharp example and test for GetBuffer methods.
• [SIMPLEITK-467] - Update super ITK build version towards 4.5.1.
• [SIMPLEITK-472] - make using 64 integers default for windows 64
• [SIMPLEITK-473] - Turn on R by default if detected.
• [SIMPLEITK-491] - Move WRAPITK option to advanced.
• [SIMPLEITK-494] - Reduce time taken for lengthy tests.
• [SIMPLEITK-501] - An optional stripping of symbols needs to be done on OSX for the distributed libraries. This reduces the size of the libraries by ~100 Megabytes.

New Feature

• [SIMPLEITK-372] - When testing is disabled Python eggs are not created by the "dist" target.
• [SIMPLEITK-410] - Add BUILD_EXAMPLES option to SimpleITK actual build.
• [SIMPLEITK-422] - Add missing connectivity to threshold connected image filter
• [SIMPLEITK-423] - adding missing resulting measurements to confidence connected filter.
• [SIMPLEITK-435] - Add basic access to Image's Meta Data Dictionary
• [SIMPLEITK-440] - Add option to dim_vec to set as a scalar for all components.
• [SIMPLEITK-441] - Create Prototype for progress reporting and call backs from filters.
• [SIMPLEITK-443] - add DiscreteGaussianDerivative Filter
• [SIMPLEITK-444] - Add additional procedure which take dim_vec as scalars if first parameter.
• [SIMPLEITK-447] - Refactor ImageFilter to include ProcessObject base class
• [SIMPLEITK-449] - There are some basic missing matrix based transforms that are missing such as Euler and Versor transforms.
• [SIMPLEITK-454] - Add call-back events and progress reporting form ITK process objects.
• [SIMPLEITK-456] - Add support to transform continuous index to physical point.
• [SIMPLEITK-462] - Add SWIG Delegate Support for Command Class
• [SIMPLEITK-463] - Add direct lambda support to ProcessObject::AddCommand in Python
• [SIMPLEITK-468] - Add output operator support for KernelEnums
• [SIMPLEITK-469] - Add output operator to PixelIDTypeEnum
• [SIMPLEITK-493] - Add script to upload data to midas.
• [SIMPLEITK-505] - Add threshold value as measurement to auto thresholding filters.
• [SIMPLEITK-506] - Add support for generating python wheel to enable pip to download binaries.

Task

• [SIMPLEITK-437] - Add more Filters.
• [SIMPLEITK-452] - Add const correctness to Get member functions.
• [SIMPLEITK-455] - Update to SWIG version 2.0.11
• [SIMPLEITK-466] - Add Doxygen page describing commands, and events in process objects.
• [SIMPLEITK-479] - Remove SWIG patch step and just patch the downloaded source
• [SIMPLEITK-481] - Update the Wrapping.dox Doxygen page
• [SIMPLEITK-485] - Update to SWIG 2.0.12
• [SIMPLEITK-486] - Update the JSON doxygen from the ITK XML.
• [SIMPLEITK-487] - Update the SWIG docs files from the update SimpleITK JSON.
• [SIMPLEITK-488] - Update the Filter Coverage
• [SIMPLEITK-492] - Reduce warnings on the dashboard.
• [SIMPLEITK-502] - Create Visual guide for using SimpleITK with CSharp on Windows.
• [SIMPLEITK-504] - Add the SimpleITK Notebook page on progress reporting to the master.

SimpleITK - Version 0.7.1

Bug

• [SIMPLEITK-419] - Fix numpy conversion warning on windows.
• [SIMPLEITK-420] - Fix numpy conversion warning on windows.
• [SIMPLEITK-421] - Documentation for Statistics image filter bounding box needs to be corrected.
• [SIMPLEITK-424] - Unable to convert 4GB+ numpy array to sitkImage

SimpleITK - Version 0.7.0 Release

Sub-task

• [SIMPLEITK-359] - Look into integration of ExternalData.cmake

Bug

• [SIMPLEITK-210] - Use printable types for ToString methods
• [SIMPLEITK-371] - SetPixel test is failing on windows in debug mode
• [SIMPLEITK-387] - CSharp version is invalid causing compilation error.
• [SIMPLEITK-398] - CSharp is missing the Image::GetBufferAs... methods
• [SIMPLEITK-401] - Verify TR1 error checking for logic
• [SIMPLEITK-405] - Fix some dashboard warnings
• [SIMPLEITK-406] - Can not convert image >4GB to numpy array
• [SIMPLEITK-408] - Swig build error on windows64 when ITK is not installed, due to excessive path length.
• [SIMPLEITK-417] - LabelStatisticsImageFilter does not reset internal measurements for each execution.

Improvement

• [SIMPLEITK-389] - Overload image operators for C# wrappers
• [SIMPLEITK-390] - Add BitwiseNot functor filter
• [SIMPLEITK-392] - Improve scanning time of JSON files.
• [SIMPLEITK-399] - Update to ITK patch release 4.3.2
• [SIMPLEITK-400] - Update towards ITK 4.4
• [SIMPLEITK-409] - There is an unneeded dependency of many of the BasicFilter libraries on the previous on. This should be removed.

New Feature

• [SIMPLEITK-330] - Add PatchBaseDenoising filter
• [SIMPLEITK-411] - Add new json field type for enums.
• [SIMPLEITK-415] - Add ClampImageFilter

Task

• [SIMPLEITK-352] - Have separate versions of SimpleITK doxygen for each version or tag
• [SIMPLEITK-355] - Add CMake file to use Midas and MD5 files for data.
• [SIMPLEITK-356] - Migrate the data from the data submodule to the Midas md5 download system.
• [SIMPLEITK-366] - System ITK with Superbuild.
• [SIMPLEITK-367] - Move WIki pages to version directories.
• [SIMPLEITK-375] - Update SimpleITK Wiki and FAQ, including compiler support and FAQ entries.
• [SIMPLEITK-407] - Update the style of SWIG and PCRE.
• [SIMPLEITK-412] - Fix dashboard issues
• [SIMPLEITK-416] - Update Source Tarball script for midas data.
• [SIMPLEITK-418] - The size of the monolithic test driver is too big on windows. This should be broken up