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| [[Image: Simpleitk_logo.png|center]]
| | <center><span style="font-size:400%;text-align:center;color:red"> We have moved all release notes to [https://github.com/SimpleITK/SimpleITK/releases github]</span></center> |
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| =SimpleITK - Version 0.9 Release=
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| ==Beta 1 Announcement==
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| NOW WITH REGISTRATION
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| We are pleased to announce the SimpleITK 0.9 beta 1!
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| This beta features the ImageRegistrationMethod which brings a SimpleITK style interface to the modular ITKv4 registration framework. This adds supports for a variety of transforms including affine, b-spline, and deformation fields. The metrics supported include correlation, means squares, ANTS neighborhood correlation, and mutual information. A variety of optimizers are available along with scales estimators. Additionally, the registration method has built in multi-scale support.
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| We encourage the community to use and test this registration interface and to provide feedback on the design and features.
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| A number of examples can be found the the examples directory to get started. These examples include Affine registration, BSpline, Demons and Displacement fields.
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| http://www.itk.org/SimpleITKDoxygen/html/examples.html
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| In additional to registration, we have added a number of new filter: AdditiveGaussianNoiseImageFilter, AggregateLabelMapFilter, BinaryImageToLabelMapFilter, ChangeLabelLabelMapFilter, CollidingFrontsImageFilter, DemonsRegistrationFilter, DiffeomorphicDemonsRegistrationFilter, DisplacementFieldJacobianDeterminantFilter, FastMarchingBaseImageFilter, FastMarchingUpwindGradientImageFilter, FastSymmetricForcesDemonsRegistrationFilter, InverseDisplacementFieldImageFilter, InvertDisplacementFieldImageFilter, LabelImageToLabelMapFilter, LabelShapeStatisticsImageFilter, LabelStatisticsImageFilter, LabelUniqueLabelMapFilter, LevelSetMotionRegistrationFilter, MergeLabelMapFilter, RelabelLabelMapFilter, SaltAndPepperNoiseImageFilter, ShotNoiseImageFilter, SpeckleNoiseImageFilter, SymmetricForcesDemonsRegistrationFilter and TransformToDisplacementFieldFilter
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| Note: We have run into a limitation with Visual Studio that prevents successful building and packaging for Windows 64. This will be addressed before the final release. Please try the 32-bit Windows version for smaller images.
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| Before the final release we will work on improving testing, adding more examples and documentation, and fixing bugs. We believe the beta is feature complete for doing registration work, but are open to critical features reported from the community.
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| You will need to manually download the beta binaries, then explicitly install the downloaded beta file.
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| Information on how to get started and download the binaries: http://www.itk.org/Wiki/SimpleITK/GettingStarted#Binaries
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| Binary distributions for many platforms and languages are available for downloading: https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.9b01/
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| Nightly Doxygen Documentation: http://www.itk.org/SimpleITKDoxygen/html/index.html
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| Additional Release Notes: http://www.itk.org/Wiki/SimpleITK/ReleaseNotes#Beta_1_Announcement
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| ==Sub-task==
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-426 SIMPLEITK-426]]] - Wrap Image registration filters
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-521 SIMPLEITK-521]]] - Add initial RegistrationMethod class with basic components
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-522 SIMPLEITK-522]]] - Add support for active optimizing transform.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-527 SIMPLEITK-527]]] - Test which transform is active during registration
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-536 SIMPLEITK-536]]] - Create Infrastructure to support testing registration
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-537 SIMPLEITK-537]]] - Add support for Displacement fields
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-538 SIMPLEITK-538]]] - Add support for B-Splines Transforms
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-548 SIMPLEITK-548]]] - Enable Python test to run via the system Python
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-549 SIMPLEITK-549]]] - Add initial Implementation of ImageRegistrationMethodv4
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-558 SIMPLEITK-558]]] - Add support for fixed and moving image masks.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-560 SIMPLEITK-560]]] - Comprehensive coverage testing of the registration framework is needed.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-561 SIMPLEITK-561]]] - Handle copy on write for the InitialTransform input to the ImageRegistrationMethod
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-562 SIMPLEITK-562]]] - Write documentation for the transform classes.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-563 SIMPLEITK-563]]] - Wrap CenteredVersorTransformInitaizalizer
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-564 SIMPLEITK-564]]] - Refactor ImageRegistrationMethodv4 ivar for components
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-574 SIMPLEITK-574]]] - Add ImageRegistrationMethodv4 methods to set all transforms
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-575 SIMPLEITK-575]]] - Add access to the estimated optimizer scales
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-595 SIMPLEITK-595]]] - Add DisplacementField specific interface
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-608 SIMPLEITK-608]]] - Add Evaluate metod to the ImageRegistrationMethod
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-609 SIMPLEITK-609]]] - Remove Transform's polymorphism cast/conversion
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|
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| ==Bug==
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-393 SIMPLEITK-393]]] - Does not write correct type for Int8
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-525 SIMPLEITK-525]]] - Enable deletion of command while an filter exists.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-526 SIMPLEITK-526]]] - Fix CreateInterpolator guarder define miss match
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-535 SIMPLEITK-535]]] - When compiled against HDF5 system library we can not write out and HDF5 transform.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-559 SIMPLEITK-559]]] - Gradient descent based optimizer don't converge at optimal position with MattesMutualInformation.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-565 SIMPLEITK-565]]] - The filters with multiple named inputs are not being checked if the image's type and dimension match.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-582 SIMPLEITK-582]]] - Unable to load certain DICOM series by seriesID
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-590 SIMPLEITK-590]]] - Fix PNG sCal issue in master
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-594 SIMPLEITK-594]]] - The sitkDisplacementFieldTransform::GetDisplacementField method returns an sitkImage which can modify the internal displacement field, this should use a copy on write mechanism.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-598 SIMPLEITK-598]]] - CMake BUILD_EXAMPLES SuperBuild flag not propogated correctly
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-616 SIMPLEITK-616]]] - Using the ImageSeriesWriter with VectorImages does not work.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-617 SIMPLEITK-617]]] - Check if the LBFGSB optimizer respects the number of iteration parameters. This may be an ITK bug.
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|
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| ==Epic==
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-1 SIMPLEITK-1]]] - Develop registration framework for ITKv4 Framework
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-571 SIMPLEITK-571]]] - Add More Registration Examples
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|
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| ==Improvement== | |
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-378 SIMPLEITK-378]]] - The Readme.md file is not particularly user friendly for Windows
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| users. Could it be renamed for the C# package to say "Readme.txt"?
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-490 SIMPLEITK-490]]] - Update Measurements to be tr1::function calls to the base ITK object.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-512 SIMPLEITK-512]]] - Add basic LabelMap Filters for manipulating labels.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-586 SIMPLEITK-586]]] - Enforcing System ITK Module dependencies
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-596 SIMPLEITK-596]]] - Update SimpleITK Doxygen doxygen.config
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-611 SIMPLEITK-611]]] - request for transform constructors
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|
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| ==New Feature==
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-298 SIMPLEITK-298]]] - MergeLabelMapFilter
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-345 SIMPLEITK-345]]] - The Image readers should have a cast or read as option
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-429 SIMPLEITK-429]]] - Some filter have optional inputs. This include PDE registration and masked thresholding. The needs to be added to the JSON.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-533 SIMPLEITK-533]]] - Develop the Interface for the ImageRegistrationMethodv4 based on the ITKv4 registration framework.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-541 SIMPLEITK-541]]] - The Demons registration based filters need an optional input for the initial deformation field.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-542 SIMPLEITK-542]]] - Add the filter from the ImageNoise module
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-543 SIMPLEITK-543]]] - Update ITK towards version 4.6
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-550 SIMPLEITK-550]]] - Add TransfromToDisplacementField filter.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-555 SIMPLEITK-555]]] - Refactor Transforms to allow specific interface for different transformation types
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-567 SIMPLEITK-567]]] - Add wrapping for the ScaleSkewVersor
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-573 SIMPLEITK-573]]] - Add missing methods to the transform interfaces
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-588 SIMPLEITK-588]]] - Add access to the GlobalPhysicalSpaceTolerance variable.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-603 SIMPLEITK-603]]] - Add transform adaptor support for the ImageRegistration method
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-605 SIMPLEITK-605]]] - Add ScaleTransform
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-607 SIMPLEITK-607]]] - Missing methods to the ImageRegistrationMethod class
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-612 SIMPLEITK-612]]] - For Image and Transform class make public and rename MakeUniqueForWrite to MakeUnique
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-613 SIMPLEITK-613]]] - Add FastMarchingUpwindGradient and CollidingFronts filters
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| ==Task==
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-361 SIMPLEITK-361]]] - Adding testing for threading in Python
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-438 SIMPLEITK-438]]] - add method to use a VectorImage as a Image of Vectors for displacement fields.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-530 SIMPLEITK-530]]] - Test and validate useful and correct functionality of the components in the ImageRegistrationMethods
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-531 SIMPLEITK-531]]] - Use SimpleITK's Registration to perform a complete neuro-imaging registration sequence.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-534 SIMPLEITK-534]]] - Verify the correct functionality and feature completeness of B-Spline transformations and deformation fields in SimpleITK.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-544 SIMPLEITK-544]]] - Update SWIG to 3.0.2
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-545 SIMPLEITK-545]]] - Upgrade PCRE to latest version.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-591 SIMPLEITK-591]]] - run script that propagates doxygen documentation to python docstring
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-599 SIMPLEITK-599]]] - Update SWIG to 3.0.4 and PCRE to 8.36
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-610 SIMPLEITK-610]]] - Fix Dashboard warnings and failing tests.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-614 SIMPLEITK-614]]] - Address CMake CMP0054 policy warnings.
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| *[[[https://issues.itk.org/jira/browse/SIMPLEITK-618 SIMPLEITK-618]]] - Update ITK super build version to 4.7.1
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| =SimpleITK - Version 0.8.1 Release=
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| ==Announcement==
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| We are pleased to announce the SimpleITK 0.8.1 Release.
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| SimpleITK is a simplified layer built on top of ITK, intended to facilitate its use in rapid prototyping, education and interpreted languages. SimpleITK provides binaries for several wrapped languages to enable users to rapidly get started using ITK.
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| Information on how to get started and download the binaries: http://www.itk.org/Wiki/SimpleITK/GettingStarted#Binaries
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| This patch release updates the ITK version to the newly released 4.7.0. Additionally, this patch contains improved support for CMake 3.0, fixes for compilation issues, the addition of the LabelOverlapMeasures filter, and a fix for the ClampCast filter.
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| Also, we are now compiling for Python 3.4, and have stopped compiling for Python 3.2. Lastly, we are providing some binaries for the Anaconda Python distribution on Binstar.
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| Binary distributions for many platforms and languages are available for downloading: https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.8.1/
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| Release Doxygen Documentation: http://www.itk.org/SimpleITKDoxygen08/html/index.html
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| Additional Release Notes: http://www.itk.org/Wiki/SimpleITK/ReleaseNotes#SimpleITK_-_Version_0.8.1_Release
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| ==Sub-task==
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-583 SIMPLEITK-583]] - Don't always use ez_setup which downloads setup tools
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|
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| ==Bug==
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-513 SIMPLEITK-513]] - The R package has version 0.5-1 for SimpleITK
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-514 SIMPLEITK-514]] - Off by one error in CMake code for splitting the basic filters library, can result in missing link dependencies.
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-517 SIMPLEITK-517]] - Associate installation of all headers with "Development" component
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-518 SIMPLEITK-518]] - Version variable not set after "find_package(SimpleITK)
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-526 SIMPLEITK-526]] - Fix CreateInterpolator guarder define miss match
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-529 SIMPLEITK-529]] - Minor Help Documentation bug
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-546 SIMPLEITK-546]] - SimpleITK Java bindings fail to compile
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-551 SIMPLEITK-551]] - Clamp cast filter is not setting correct bounds.
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-552 SIMPLEITK-552]] - CMake 3.0 warning - Do not use LOCATION property in Wrapping/CMakeLists.txt
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-553 SIMPLEITK-553]] - CMake 3.0 warning - sitkConfigureFileBuildtime - non-existent target in get_target_property
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-554 SIMPLEITK-554]] - CMake 3.0 Waring - TARGET SimpleITKBasicFilters does not exist
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-568 SIMPLEITK-568]] - In Doxygen coming from ITK, there are missing spaces before and after some reference links
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-581 SIMPLEITK-581]] - For the Superbuild have a way so specify the paths which are searched for system libraries.
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-584 SIMPLEITK-584]] - Address compilation warning on the CDash package release section.
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-589 SIMPLEITK-589]] - Update png test images with an sCal of METER.
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|
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| ==Improvement==
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-489 SIMPLEITK-489]] - Wrap the LabelOverlapMeasures filter
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-510 SIMPLEITK-510]] - LabelStatisticsImageFilter needs the option to turn off using histograms.
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-577 SIMPLEITK-577]] - On Windows add support to build SimpleITK shared but use release Python libraries.
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-585 SIMPLEITK-585]] - Upgrade ITK Superbuild version to 4.7
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-569 SIMPLEITK-569]] - Upgrade 0.8 to use ITK 4.6
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|
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| ==Task==
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-503 SIMPLEITK-503]] - Update a the visual guide for building on Linux, change to debian, and update packages needed.
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-511 SIMPLEITK-511]] - Update to ITK 4.5.2
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-523 SIMPLEITK-523]] - Update the SWIG .i documentation files for the new LabelOverlap filter.
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-578 SIMPLEITK-578]] - Update To ITK 4.6.1
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| *[[https://issues.itk.org/jira/browse/SIMPLEITK-587 SIMPLEITK-587]] - Update JSON Doxygen strings with latest from ITK 4.7
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| | |
| =SimpleITK - Version 0.8.0 Release=
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| ==Announcement==
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| We are happy to announce the SimpleITK 0.8.0 Release.
| |
| | |
| SimpleITK is a simplified layer built on top of ITK, intended to facilitate its use in rapid prototyping, education and interpreted languages. SimpleITK provide binaries for several wrapped languages to enable users to rapidly get started using ITK.
| |
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| Information on how to get started and download the binaries:
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| http://www.itk.org/Wiki/SimpleITK/GettingStarted#Binaries
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| | |
| Improvements:
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| * Support for events and command call-backs. More information can be found here: http://www.itk.org/SimpleITKDoxygen/html/CommandPage.html
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| ** Includes lambdas for Python, and derived delegate classes for CSharp, Java, Ruby and Python.
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| * Support for compiling OSX Mavericks, by enabling C+11 automatically.
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| * Improved support for C++11
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| * Improved support for setting dimensional vector parameters as scalars in the OOP interface
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| * Improved ProcessObject base class features in OOP interface
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| * Swig 2.0.12
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| * Wrapping for R will automatically be enabled if detected due to increased stability with SWIG update.
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| * Improved printing of enum types.
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| * Automatically enabling >4GB image on windows.
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| * Newly wrapped filters BinShrinkImageFilter, CyclicShiftImageFilter, DiscreteGaussianDerivativeImageFilter, LabelVotingImageFilter, and WarpImageFilter.
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| * Threshold measurement available in automatic thresholding filters
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| * Experimental Support for generating Python wheels
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| * ITK 4.5.1
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| Compatibility:
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| * The operator "~" was incorrectly implemented as a logical not. This has been corrected to be a bitwise not operator for images.
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| * The KernelEnum types as an object member has been deprecated.
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| ** In-favor of namespace enum: http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a38998f2c7b469b1ad8e337a0c6c0697b
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| Updated Documentation:
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| *http://www.itk.org/Wiki/SimpleITK/GettingStarted/Visual_guide_to_building_on_Linux
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| *http://www.itk.org/Wiki/SimpleITK/GettingStarted/A_visual_guide_to_SimpleITK_with_CSharp
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| *http://simpleitk.github.io/SimpleITK-Notebooks/41_Progress.html
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| Binary distribution for many platforms and languages are available for downloading:
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| https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.8.0/
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| Release Doxygen Documentation:
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| http://www.itk.org/SimpleITKDoxygen08/html/index.html
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| Additional Release Note:
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| http://www.itk.org/Wiki/index.php?title=SimpleITK/ReleaseNotes#SimpleITK_-_Version_0.8.0_Release
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| | |
| ==Sub-task==
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-391 SIMPLEITK-391]] - Correct overloaded operator to use Bitwise filter for bitwise operators
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-476 SIMPLEITK-476]] - Check if the custom std_vector.i file for R is still needed
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-477 SIMPLEITK-477]] - Latest R installs require a NAMESPACE file
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| ==Bug==
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-445 SIMPLEITK-445]] - `GLIBC_2.14' not found
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-451 SIMPLEITK-451]] - The C++ Examples are not being tested.
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-453 SIMPLEITK-453]] - CLang 5.0 OS X 10.9 std::tr1 namespace doesn't exist
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-478 SIMPLEITK-478]] - Test Java Command Delegate
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-480 SIMPLEITK-480]] - Automatically add -std=c++11 flag for clang 5.0 on mavericks.
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-482 SIMPLEITK-482]] - Fix CMake configuration warning about linking to ourselves.
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-495 SIMPLEITK-495]] - Update virtualenv version, not compatible with Ubuntu 13.10, or Debian testing
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-496 SIMPLEITK-496]] - On Maverick with c++11 SWIG is failing with Java and std::vector<bool>
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| * [[https://issues.itk.org/jira/browse/SIMPLEITK-507 SIMPLEITK-507]] - The Examples in the "Segmentation" sub-directory are not being run and need to be updated.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-508 SIMPLEITK-508]] - The Python PEP386 version should not have a '.' before the release candidate suffix.
| |
| | |
| | |
| ==Improvement==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-430 SIMPLEITK-430]] - The InterpolatorEnums are print as integers, this should be strings.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-431 SIMPLEITK-431]] - The enums for morphology filters are local to each filter, they should be moved to common location with the sitk prefix.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-432 SIMPLEITK-432]] - upgrade toward ITK 4.5
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-433 SIMPLEITK-433]] - Add Warp ImageFilter
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-434 SIMPLEITK-434]] - Add BinShrink filter
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-436 SIMPLEITK-436]] - Expose the hidden CMake Variable as advanced options.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-450 SIMPLEITK-450]] - Break compilation of LabelStatisticsImageFilter into 2 file for compilation speed.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-457 SIMPLEITK-457]] - Add CSharp example and test for GetBuffer methods.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-467 SIMPLEITK-467]] - Update super ITK build version towards 4.5.1.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-472 SIMPLEITK-472]] - make using 64 integers default for windows 64
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-473 SIMPLEITK-473]] - Turn on R by default if detected.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-491 SIMPLEITK-491]] - Move WRAPITK option to advanced.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-494 SIMPLEITK-494]] - Reduce time taken for lengthy tests.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-501 SIMPLEITK-501]] - An optional stripping of symbols needs to be done on OSX for the distributed libraries. This reduces the size of the libraries by ~100 Megabytes.
| |
| | |
| ==New Feature==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-372 SIMPLEITK-372]] - When testing is disabled Python eggs are not created by the "dist" target.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-410 SIMPLEITK-410]] - Add BUILD_EXAMPLES option to SimpleITK actual build.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-422 SIMPLEITK-422]] - Add missing connectivity to threshold connected image filter
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-423 SIMPLEITK-423]] - adding missing resulting measurements to confidence connected filter.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-435 SIMPLEITK-435]] - Add basic access to Image's Meta Data Dictionary
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-440 SIMPLEITK-440]] - Add option to dim_vec to set as a scalar for all components.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-441 SIMPLEITK-441]] - Create Prototype for progress reporting and call backs from filters.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-443 SIMPLEITK-443]] - add DiscreteGaussianDerivative Filter
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-444 SIMPLEITK-444]] - Add additional procedure which take dim_vec as scalars if first parameter.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-447 SIMPLEITK-447]] - Refactor ImageFilter to include ProcessObject base class
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-449 SIMPLEITK-449]] - There are some basic missing matrix based transforms that are missing such as Euler and Versor transforms.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-454 SIMPLEITK-454]] - Add call-back events and progress reporting form ITK process objects.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-456 SIMPLEITK-456]] - Add support to transform continuous index to physical point.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-462 SIMPLEITK-462]] - Add SWIG Delegate Support for Command Class
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-463 SIMPLEITK-463]] - Add direct lambda support to ProcessObject::AddCommand in Python
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-468 SIMPLEITK-468]] - Add output operator support for KernelEnums
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-469 SIMPLEITK-469]] - Add output operator to PixelIDTypeEnum
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-493 SIMPLEITK-493]] - Add script to upload data to midas.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-505 SIMPLEITK-505]] - Add threshold value as measurement to auto thresholding filters.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-506 SIMPLEITK-506]] - Add support for generating python wheel to enable pip to download binaries.
| |
| | |
| | |
| ==Task==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-437 SIMPLEITK-437]] - Add more Filters.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-452 SIMPLEITK-452]] - Add const correctness to Get member functions.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-455 SIMPLEITK-455]] - Update to SWIG version 2.0.11
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-466 SIMPLEITK-466]] - Add Doxygen page describing commands, and events in process objects.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-479 SIMPLEITK-479]] - Remove SWIG patch step and just patch the downloaded source
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-481 SIMPLEITK-481]] - Update the Wrapping.dox Doxygen page
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-485 SIMPLEITK-485]] - Update to SWIG 2.0.12
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-486 SIMPLEITK-486]] - Update the JSON doxygen from the ITK XML.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-487 SIMPLEITK-487]] - Update the SWIG docs files from the update SimpleITK JSON.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-488 SIMPLEITK-488]] - Update the Filter Coverage
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-492 SIMPLEITK-492]] - Reduce warnings on the dashboard.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-502 SIMPLEITK-502]] - Create Visual guide for using SimpleITK with CSharp on Windows.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-504 SIMPLEITK-504]] - Add the SimpleITK Notebook page on progress reporting to the master.
| |
| | |
| =SimpleITK - Version 0.7.1 Release=
| |
| | |
| ==Bug==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-419 SIMPLEITK-419]] - Fix numpy conversion warning on windows.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-420 SIMPLEITK-420]] - Fix numpy conversion warning on windows.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-421 SIMPLEITK-421]] - Documentation for Statistics image filter bounding box needs to be corrected.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-424 SIMPLEITK-424]] - Unable to convert 4GB+ numpy array to sitkImage
| |
| | |
| =SimpleITK - Version 0.7.0 Release=
| |
| | |
| ==Announcement==
| |
| | |
| We are pleased to announce the release of SimpleITK 0.7.0!
| |
| | |
| The release's binary built distributions are available for many languages and platforms. They are available for download:
| |
| | |
| http://sourceforge.net/projects/simpleitk/files/SimpleITK/0.7.0/
| |
| | |
| There are numerous binaries available for download for Python via setuptools' easy_install. Additionally, we have select binary distributions for C# and Java. Information on downloading and getting started can be found here:
| |
| | |
| http://www.itk.org/Wiki/SimpleITK/GettingStarted#Downloading_the_binaries
| |
| | |
| Notable improvement:
| |
| * Based on ITK 4.4.2 with enhanced performance for operators
| |
| * New filters including: Clamp, PatchedBasedDenoising, ScalarChanAndVese, BitwiseNot
| |
| * Support for 64-bit integer Pixels ( not enable with windows VS9, nor packaged )
| |
| * Add Debug flag for filters to print ITK filter
| |
| * Bug fixes.
| |
| * And Many more!
| |
| | |
| CSharp:
| |
| * Additional image overloaded operators
| |
| | |
| Doxygen for this release can be found here:
| |
| http://itk.org/SimpleITKDoxygen07/html/pages.html
| |
| | |
| ==Sub-task==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-359 SIMPLEITK-359]] - Look into integration of ExternalData.cmake
| |
| | |
| | |
| ==Bug==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-210 SIMPLEITK-210]] - Use printable types for ToString methods
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-371 SIMPLEITK-371]] - SetPixel test is failing on windows in debug mode
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-387 SIMPLEITK-387]] - CSharp version is invalid causing compilation error.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-398 SIMPLEITK-398]] - CSharp is missing the Image::GetBufferAs... methods
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-401 SIMPLEITK-401]] - Verify TR1 error checking for logic
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-405 SIMPLEITK-405]] - Fix some dashboard warnings
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-406 SIMPLEITK-406]] - Can not convert image >4GB to numpy array
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-408 SIMPLEITK-408]] - Swig build error on windows64 when ITK is not installed, due to excessive path length.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-417 SIMPLEITK-417]] - LabelStatisticsImageFilter does not reset internal measurements for each execution.
| |
| | |
| | |
| ==Improvement==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-389 SIMPLEITK-389]] - Overload image operators for C# wrappers
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-390 SIMPLEITK-390]] - Add BitwiseNot functor filter
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-392 SIMPLEITK-392]] - Improve scanning time of JSON files.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-399 SIMPLEITK-399]] - Update to ITK patch release 4.3.2
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-400 SIMPLEITK-400]] - Update towards ITK 4.4
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-409 SIMPLEITK-409]] - There is an unneeded dependency of many of the BasicFilter libraries on the previous on. This should be removed.
| |
| | |
| | |
| ==New Feature==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-330 SIMPLEITK-330]] - Add PatchBaseDenoising filter
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-411 SIMPLEITK-411]] - Add new json field type for enums.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-415 SIMPLEITK-415]] - Add ClampImageFilter
| |
| | |
| | |
| ==Task==
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-352 SIMPLEITK-352]] - Have separate versions of SimpleITK doxygen for each version or tag
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-355 SIMPLEITK-355]] - Add CMake file to use Midas and MD5 files for data.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-356 SIMPLEITK-356]] - Migrate the data from the data submodule to the Midas md5 download system.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-366 SIMPLEITK-366]] - System ITK with Superbuild.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-367 SIMPLEITK-367]] - Move WIki pages to version directories.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-375 SIMPLEITK-375]] - Update SimpleITK Wiki and FAQ, including compiler support and FAQ entries.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-407 SIMPLEITK-407]] - Update the style of SWIG and PCRE.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-412 SIMPLEITK-412]] - Fix dashboard issues
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-416 SIMPLEITK-416]] - Update Source Tarball script for midas data.
| |
| * [[https://issues.itk.org/jira/browse/SIMPLEITK-418 SIMPLEITK-418]] - The size of the monolithic test driver is too big on windows. This should be broken up
| |
