ITK/Release Schedule: Difference between revisions

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(removing duplicated or already imported contributions)
(A Label Geometry Image Filter for Multiple Object Measurement and Label object representation and manipulation with ITK similarities)
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* [http://www.insight-journal.org/browse/publication/83 Incorporating Metric Flows and Sparse Jacobian Transformations in ITK]
* [http://www.insight-journal.org/browse/publication/83 Incorporating Metric Flows and Sparse Jacobian Transformations in ITK]
* [http://www.insight-journal.org/browse/publication/317 Information-Theoretic Directly Manipulated Free-Form Deformation Labeled Point-Set Registration]
* [http://www.insight-journal.org/browse/publication/317 Information-Theoretic Directly Manipulated Free-Form Deformation Labeled Point-Set Registration]
* [http://www.insight-journal.org/browse/publication/176 Label object representation and manipulation with ITK] (65 classes)
* [http://www.insight-journal.org/browse/publication/176 Label object representation and manipulation with ITK] (65 classes). Provides most of the features of [http://insight-journal.org/browse/publication/301 A Label Geometry Image Filter for Multiple Object Measurement], but there are still a few ones not covered.
* [http://www.insight-journal.org/browse/publication/322 Level Set Segmentation: Active Contours without edge] (10~20 classes)(combine with paper 323) (Karthik)
* [http://www.insight-journal.org/browse/publication/322 Level Set Segmentation: Active Contours without edge] (10~20 classes)(combine with paper 323) (Karthik)
* [http://www.insight-journal.org/browse/publication/230 Live-Wire-ing the Insight Toolkit with Intelligent Scissors] (1~2 classes)
* [http://www.insight-journal.org/browse/publication/230 Live-Wire-ing the Insight Toolkit with Intelligent Scissors] (1~2 classes)

Revision as of 21:56, 30 April 2009

Schedule of upcoming ITK releases

Release Number Date
2.2 August 30 2005
2.4 November 30 2005
2.6 February 28 2006
2.8 May 30 2006
3.0 October 30 2006
3.2 February 28 2007
3.4 Jun 30 2007
3.6 Sept 30 2007
3.8 Jul 30 2008
3.10 Nov 6 2008
3.12 Jan 6 2009


Release Life Cycle

Last period for adding classes and features

  • New classes will be selected from good reviews from the Insight Journal
  • New features and new methods can be added during this period.

Feature Freeze

  • Increase code coverage
    • address any UNTESTED files
    • address files with code coverage lower than 80%
  • Address Run-time memory issues
    • Purify reports
    • Valgrind reports

CVS Tagging

The repository is tagged by using two tags, one for the reference, and another for the branch.

Posting Tarballs

  • Tarballs are posted to SourceForge
  • Tarballs are linked from the ITK Download

Release 2.4 Schedule

Release Number Start Date End Date
Last period for adding classes October 15 2005 November 11 2005
Feature freeze November 12 2005 November 28 2005
CVS Tagging November 29 2005 November 29 2005
Posting tarballs November 30 2005 November 30 2005

Release 2.6 Schedule

Release Number Start Date End Date
Last period for adding classes January 15 2006 February 11 2006
Feature freeze February 12 2006 February 26 2006
CVS Tagging February 26 2006 February 26 2006
Testing tarballs February 26 2006 February 28 2006
Posting tarballs February 28 2006 February 28 2006


ITK: [Welcome | Site Map]

Contributions

Contributions from the Insight Journal being considered for inclusion in this Release. We will follow the procedures outlined here.


Deadline for having 3 reviews : January 31

Except for submission taken from MICCAI Workshop, for which only a code review is needed.

Paper Reviewer 1 Done Reviewer 2 Done Reviewer 3 Done Shepherd Recommendation Committed
Unsupervised Segmentation of Miofibers (from MICCAI Workshop) Luis X Luis Include AutomaticThresholdImageFilter (rename class and methods, fix coding style) Not yet
Tetrahedral Meshing (from MICCAI Workshop) Vincent Sylvain X Not include in 2.6, it has Licensing issues Will not
Open Topology Toolkit (from MICCAI Workshop) Bill Do not include in itk 2.6 Will not
Local Maxima Image Filter Karthik X Andinet Dan X Luis include in 2.6 Not Yet
B-Spline Scattered Data Approximation Luis Lydia Lydia Defer for ITK 2.8 Will not
Binary Morphological opening and closing Luis Jim Sylvain X Jim Waiting for Author revisions. Defer for ITK 2.8 Will not
Invert Intensity Image Filter Luis X Bill X Sylvain X Bill Include with minor coding style changes Yes
Morphological Gradient Karthik X Jim X Bill X Bill Include with minor coding changes Yes
Modulus Image Filter Luis X Jim X Bill X Bill Include with minor coding changes Yes
Minimal Imposition Image Filter Luis Sylvain X Luis Include with minor coding changes Not yet
MINC 2.0 IO Support for ITK Luis Mathieu X Sylvain X Defer for ITK 2.8. Concerns about library dependencies. Will not
Finding regional extrema Luis Jim Luis Include with minor coding changes (name) Not tet
Extending MATLAB with ITK Karthik Dan Karthik Include in Insight Applications Yes
Image Calculator Luis Vincent Bill Hans hold on for the reviews Yes
Probability Distributions for the Insight Journal Karthik X Luis X Stephen X Jim Include (finish the reviews) Not Yet
Updating GDCM + adding JPEG 2000 Mathieu Mathieu to write a report for the IJ Yes
ITK Filter for Bayesian Segmentation Karthik Andinet Luis Karthik Include (still finish the reviews) Yes

Release 2.8 Schedule

Release Number Start Date End Date
Reviewing Insight Journal April 1 2006 May 1 2006
Last period for adding classes May 1 2006 May 12 2006
Feature freeze May 12 2006 May 26 2006
CVS Tagging May 27, 2006 May 27, 2006
Testing tarballs May 28, 2006 May 29, 2006
Posting tarballs May 29 2006 May 30 2006


Contributions

Contributions from the Insight Journal being considered for inclusion in this Release. We will follow the procedures outlined here.


Deadline for having 3 reviews : May 1st 2006


Paper Reviewer 1 Done Reviewer 2 Done Reviewer 3 Done Shepherd Recommendation Committed
WrapITK: Enhanced languages support for the Insight Toolkit Luis
Incorporating Metric Flows and Sparse Jacobian Transformations in ITK
Optimized Image Iterators Jim Luis Gaetan X
Improving features and performance of binary erode and dilate filters Jim
Label Overlay Julien X Bill
A small rework for the Gaussian Derivative Image Function Julien
N-D Linear Time Exact Signed Euclidean Distance Transform Vamsi X Luis X Gaetan X Luis
Improving performance of morphological reconstruction Jim
Optimization of connected component labelling Jim Luis
Changes to itk::PathToImageFilter
ContourExtractor2DImageFilter: A subpixel-precision image isocontour extraction filter Bill Julien
Image projections along an axis Jim

Release 3.0 Schedule

Release Number Start Date End Date
Reviewing Insight Journal (IJ) Sept 1 2006 Sept 20 2006
Selecting best IJ papers Sept 20 2006 Sept 30 2006
Moving IJ code into ITK Review Directory Oct 1 2006 Oct 14 2006
Feature freeze, fixing tests, code coverage Oct 15 2006 Oct 27 2006
CVS Tagging Oct 27, 2006 Oct 27, 2006
Testing tarballs Oct 28, 2006 Oct 29, 2006
Posting tarballs Oct 29 2006 Oct 30 2006


Contributions

Contributions from the Insight Journal being considered for inclusion in this Release. We will follow the procedures outlined here.


Deadline for having 3 reviews by ITK developers : September 20 2006


Paper Reviewer 1 Done Reviewer 2 Done Reviewer 3 Done Shepherd Recommendation Put in Review Committed
WrapITK: Enhanced languages support for the Insight Toolkit



ITK: [Welcome | Site Map]

Release 3.2 Schedule

Release Number Start Date End Date
Reviewing Insight Journal (IJ) Dec 5 2006 Dec 15 2006
Selecting best IJ papers Dec 5 2006 Dec 30 2006
Moving IJ code into ITK Review Directory Jan 1 2007 Jan 30 2007
Feature freeze, fixing tests, code coverage Feb 1 2007 Feb 27 2007
CVS Tagging Feb 28, 2007 Feb 28, 2007
Testing tarballs Mar 1, 2007 Mar 3, 2007
Posting tarballs Mar 3 2007 Mar 5 2007


Contributions

Contributions from the Insight Journal being considered for inclusion in this Release.

We will follow the procedures outlined here.

High Priority

  1. Improving features binary erode and dilate [1] (Shepherd: Gaetan Lehman) [now in CVS]
  2. An ITK Filter for Bayesian Segmentation: itkBayesianClassifierImageFilter [2] (Shepherd: Karthik Krishnan)
  3. Watershed transform [3] (Shepherd: Gaetan Lehman)
  4. Label Overlay [4] (Shepherd: Andinet Enquobahrie) [now in CVS Review]
  5. Finding regional extrema - methods and performance [5] (Shepherd: Andinet Enquobahrie) [now in CVS Review]
  6. Neural Networks IO [6] (Shepherd: Stephen Aylward) [now in CVS Review]
  7. Probability Distributions for the Insight Toolkit [7] (Shepherd: Stephen Aylward) [now in CVS Review]
  8. Contour Extractor 2D [8] (Shepherd: Andinet Enquobahrie) [now in CVS Review]
  9. Image projections along an axis [9] (Shepherd: Andinet Enquobahrie) [now in CVS Review]
  10. itk Quad Mesh [10] (Shepherd: Sylvain Jaume) [data structures now in CVS Review]
  11. Using a mask to decrease computation for Spatial Object to image [11] (Shepherd: Julien Jomier)
  12. Conformal Flattening ITK Filter [12] (Shepherd: Sylvain Jaume) [now in CVS Review]

Medium Priority

  1. A Generalized Squared Euclidean Distance Transform with Voronoi Maps [13] (Shepherd: Luis Ibanez)
  2. I-DO: A Deformable Organisms framework for ITK [14] (Shepherd: Luis Ibanez)
  3. Incorporating Metric Flows and Sparse Jacobian Transorm in ITK [15] (Shepherd: Stephen Aylward)
  4. Minimal Imposition Image Filter [16] (Shepherd: Julien Jomier)
  5. Implementing the Automatic Generation of 3D Statistical Shape Models with ITK [17] (Shepherd: Vincent Magnotta)
  6. itkEllipseBoundaryToImageFilter [18] (Shepherd: Hans Johnson)
  7. itkLocalMaximaImageFilter [19] (Shepherd: Gaetan Lehmann)
  8. Binary morphological closing and opening image filter [20] (Shepherd: Stephen Aylward)
  9. Computational Geometry Computation and KNN Segmentation in ITK [21] (Shepherd: Stephen Aylward)
  10. FFT Complex to Complex filters and helper classes [22] (Shepherd: Gaetan Lehmann)
  11. FFT Shift [23] (Shepherd: Julien Jomier)
  12. Parallel 3D Exact Signed Euclidean Distance Transform [24] (Shepherd: Sayan Pathak)

Low Priority

  1. MINC2.0 IO Support for ITK [25]
  2. Optimized image iterators [26]
  3. Support for "cub" image format [27]
  4. Cumulative Gaussian Curve Fitter for Boundary Parameterization [28]


Release 3.4 Schedule

Release Number Start Date End Date
Reviewing Insight Journal (IJ) - -
Selecting best IJ papers - -
Moving IJ code into ITK Review Directory - -
Feature freeze, fixing tests, code coverage Sep 1 2007 Sept 15 2007
CVS Tagging Sept 16, 2007 Sept 16, 2007
Testing tarballs Sept 16, 2007 Sept 16, 2007
Posting tarballs Sept 17 2007 Sept 17 2007


Contributions


ITK: [Welcome | Site Map]

High Priority

  1. Using a Mask to Decrease Computation Time for SpatialObject to Image Conversions [29] (Shepherd: Julien Jomier)
  2. Digital Topology [30] (Shepherd: ??)
  3. Computational Geometry Computation and KNN Segmentation in ITK [31] (Shepherd: ??)
  4. itkEllipseBoundaryToImageFilter [32] (Shepherd: Hans Johnson)
  5. Implementing the Automatic Generation of 3D Statistical Shape Models with ITK [33] (Shepherd: Vincent Magnotta)
  6. I-DO: A Deformable Organisms framework for ITK [34] (Shepherd: Luis Ibanez)
  7. Minimal Imposition Image Filter [35] (Shepherd: Julien Jomier)
  8. Binary morphological closing and opening image filter [36] (Shepherd: Luis Ibanez)
  9. Support for "cub" image format [37] (Shepherd: Luis Ibanez)


Release 3.6 Schedule

Release Number Start Date End Date
Moving code from ITK Review Directory to final destination Jan 5 2008 Jan 25 2008
Reviewing Insight Journal (IJ) Jan 5 2008 Jan 18 2008
Selecting best IJ papers Jan 18 2008 Jan 18 2008
Bug triage Jan 18 2008 Jan 18 2008
Moving IJ code into ITK Review Directory Jan 19 2008 Jan 31 2008
Feature freeze, fixing tests, code coverage Feb 1 2008 Feb 27 2008
CVS Tagging Feb 28, 2008 Feb 28, 2008
Testing tarballs Feb 28, 2008 Feb 28, 2008
Posting tarballs Feb 29 2008 Feb 29 2008

Deprecated code to be removed

  • Alpha parameter from the Kernel Transforms

Code to be moved from Review to final destination

  • Transform Readers Writers
    • Pick a filename extension
    • Do code reviews
  • VTKPolyData Reader Writer (Not Yet: doesn't support QMesh)
    • Check tests
  • Label filters
    • Label Overlay
    • Labet RGB
  • Morphology Filters
  • ConformalFlattening
  • ContourExtractor
  • FlatStructuringElement
  • ProjectionFilters
  • MINC ImageIO support
  • NeuralNetworks (Not Ready)
    • It can't create arbitrary Neural Networks.
    • In its current form, the user must know the structure of the Neural Network, and must instantiate it, before she/he can read it from a file.
    • (Discussed at tcon Feb 22 2008): Minutes 022208

Contributions from IJ

High Priority

  1. Digital Topology [38] (Shepherd: )
  2. vtkINRIA3D: A VTK Extension for Spatiotemporal Data Synchronization, Visualization and Management [39] (Shepherd: )
  3. Using a Mask to Decrease Computation Time for SpatialObject to Image Conversions [40] (Shepherd: )
  4. FFT Complex to Complex filters and helper classes [41] (Shepherd: )
  5. itkEllipseBoundaryToImageFilter [42] ( Shepherd: )
  6. Implementing the Automatic Generation of 3D Statistical Shape Models with ITK [43] (Shepherd: )
  7. Optimizing ITK’s Registration Methods for Multi-processor, Shared-Memory Systems [44] (Shepherd: )[Done]
  8. I-DO: A Deformable Organisms framework for ITK [45] (Shepherd: )
  9. Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy [46] (Shepherd: )
  10. Multidimensional Arrays and the nArray Package [47] (Shepherd: )
  11. A Generalized Squared Euclidean Distance Transform with Voronoi Maps [48] (Shepherd: )
  12. A support for "cub" image format [49] (Shepherd: )[Done]
  13. Binary morphological closing and opening image filters [50] (Shepherd: )
  14. MinimaImpositionImageFilter [51] (Shepherd: )

Low Priority

  1. Non-rigid Groupwise Registration using B-Spline Deformation Model [52] (Shepherd: )
  2. Generalizing vesselness with respect to dimensionality and shape [53] (Shepherd: )
  3. Incorporating Metric Flows and Sparse Jacobian Transformations in ITK [54] (Shepherd: )
  4. Class for Serial Transformations [55] (Shepherd: )
  5. Kappa Sigma Clipping [56] (Shepherd: )
  6. Radial Thickness Calculation and Visualization for Volumetric Layers [57] (Shepherd: )
  7. Label object representation and manipulation with ITK [58] (Shepherd: )
  8. Cumulative Gaussian Curve Fitter for Boundary Parameterization [59] (Shepherd: )
  9. Optimized image iterators [60] (Shepherd: )
  10. Slice by slice filtering with ITK [61] (Shepherd: )
  11. Consolidated morphology [62] (Shepherd: )
  12. Reader/Writer for Analyze Object Maps for ITK [63] (Shepherd: )
  13. A small rework for the Gaussian Derivative Image Function [64] (Shepherd: )


ITK: [Welcome | Site Map]

Comment (Feb. 2, 2008, R Brooks)

With regard to the class for serial transformations, this is an excellent and useful idea. However, the paper linked to here does not support the registration framework, where as another paper on the same topic does. [65] That paper, however, has its own set of limitations. I think that a class for serial or combined transforms is a valuable addition. However, I worry that if done prematurely, we would be stuck with a limited interface due to ITKs backwards compatibility policies. I think some serious thought should be put into how this interface should work before committing to a particular implementation.

At the very least i think that any such class should support:

  1. The registration framework - ie - proper Jacobians
  2. An arbitrarily long chain of transformations
  3. The ability to have some fixed and some parameterized transforms - by this i mean that some transformation parameters do not appear in the GetParameters and Jacobian methods.
  4. Some sort of intelligent interaction with the transform reader and writer classes.

I suppose that I should kick myself a bit, for not having reviewed either of these papers. I'll post this to the list as well and see if it spawns discussion.


Release 3.8 Schedule

Release Number Start Date End Date
Moving code from ITK Review Directory to final destination Jun 5 2008 Jun 25 2008
Reviewing Insight Journal (IJ) Jun 5 2008 Jun 18 2008
Selecting best IJ papers Jun 18 2008 Jun 18 2008
Bug triage Jun 18 2008 Jun 18 2008
Moving IJ code into ITK Review Directory Jun 19 2008 Jun 30 2008
Feature freeze, fixing tests, code coverage Jul 1 2008 Jul 27 2008
CVS Tagging Jul 28, 2008 Jul 28, 2008
Testing tarballs Jul 28, 2008 Jul 28, 2008
Posting tarballs Jul 29 2008 Jul 29 2008

Release 3.10 Schedule

Release Number Start Date End Date
Moving code from ITK Review Directory to final destination Sep 5 2008 Sep 25 2008
Reviewing Insight Journal (IJ) Sep 5 2008 Sep 18 2008
Selecting best IJ papers Sep 18 2008 Sep 18 2008
Bug triage Sep 18 2008 Sep 18 2008
Moving IJ code into ITK Review Directory Sep 19 2008 Sep 30 2008
Feature freeze, fixing tests, code coverage Oct 1 2008 Oct 27 2008
CVS Tagging Oct 28, 2008 Oct 28, 2008
Testing tarballs Oct 28, 2008 Oct 28, 2008
Posting tarballs Oct 29 2008 Oct 29 2008

Insight Journal Papers to move to Review

Current suggested list:

Meshes (To be moved and supported by Alex Gouaillard and Arnaud Gelas @ Harvard)

Image


Release 3.12 Schedule

Release Number Start Date End Date
Moving code from ITK Review Directory to final destination Dec 5 2008 Feb 20th 2009
Reviewing Insight Journal (IJ) Nov 15 2008 Feb 15th 2009
Selecting IJ papers Nov 15 2008 Feb 15th 2009
Bug triage Nov 30 2008 Feb 22nd 2009
Moving IJ code into ITK Review Directory Nov 15 2008 Feb 22nd 2009
Feature freeze, fixing tests, code coverage Feb 23 2008 Feb 23th 2009
CVS Tagging Feb 28th, 2009 Feb 28th, 2009
Testing tarballs Feb 28th, 2009 Feb 28th, 2009
Posting tarballs Feb 28th, 2009 Feb 28th, 2009

Insight Journal Papers to move to Review

Current suggested list:


Release 3.14 Schedule

Release Number Start Date End Date
Moving code from ITK Review Directory to final destination March 15 2009 May 24 2009
Reviewing Insight Journal (IJ) March 15 2009 May 15 2009
Selecting IJ papers April 1 2009 May 15 2009
Bug triage April 1 2009 April 7 2009
Moving IJ code into ITK Review Directory April 1 2009 May 24 2009
Feature freeze, fixing tests, code coverage May 25 2009 May 29 2009
CVS Tagging May 30 2009 May 30, 2009
Testing tarballs May 30 2009 May 30 2009
Posting tarballs May 31 2009 May 31 2009

Insight Journal Papers to move to Review

Current suggested list:

Part A

Part B

Check-list for Moving Code from IJ to Review and from Review

For IJ Articles To Review

  • Responsible developer should add a review before moving into local copy of Review. Please provide authors with feedback regarding changes that were made to conform to ITK style/documentation etc.

For Moving Code From Review

  • At least one independent (other than contributor) should sign off on the API
  • Coverage should be as close to 100% as possible.
    • and never lower than 90%.
    • For example, itkTransformIOBase.cxx is only at 63% coverage. Should be easily fixed by adding a Print() to one of the tests.

For All

  • Check all comments for proper English
  • Should pass KWStyle. IJ articles should be checked with KWStyle before checking into repository.
  • Should pass PrintSelf. IJ articles should pass PrintSelf check before checking into repository.
  • ITK_EXPORT should appear in each class definition. This triggers the PrintSelf checker.
  • Replace itkGetMacro with itkGetConstMacro.
  • Header file should contain Insight Journal citation
    • Using the "handle" link.
  • Use vcl verions of all transcendental functions.
    • For example, itkGaborKernelFunction used sin() and cos() rather than vcl_sin() and vcl_cos().
  • Progress should be present for all filters. Use itk::SimplerFilterWatcher to exercise progress and PrintSelfs.
  • When appropriate, class should handle image directions. Tests should use non-default values for origin, spacing and dimension.
    • GaborImageSource did not provide methods to set/get directions.
  • Regression tests names should when possible have the same name as the test.
  • Regression images should not use Analyze format unless the test is for the AnalyzeImageIO and related classes.

Review Articles to be Moved

Current suggested list:

  • itkTransformReader
    • (and associated factories)
  • Multi-threaded Registration
  • Consolidated Morphology
    • These classes need a code walk through to review Method names, especially internally used names. There are several that do not conform to ITK naming conventions. (e.g. itkBoxUtilities: setConnectivityEarlyBox
  • Binary Functor Filters
    • AddConstant, DivideByConstant, MultiplyByConstant, SubtractConstantFrom
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