ITK/Examples/ImageProcessing/BinaryStatisticsOpeningImageFilter

BinaryStatisticsOpeningImageFilter.cxx

<source lang="cpp">

1. include "itkBinaryStatisticsOpeningImageFilter.h"
2. include "itkImageFileWriter.h"

typedef itk::Image<unsigned char, 2> ImageType; void CreateImage(ImageType::Pointer image1, ImageType::Pointer image2);

int main(int argc, char* argv[]) {

 ImageType::Pointer binaryImage = ImageType::New();
 ImageType::Pointer featureImage = ImageType::New();
   
 CreateImage(binaryImage, featureImage);

 typedef itk::BinaryStatisticsOpeningImageFilter<ImageType, ImageType> 
   BinaryOpeningType;
 BinaryOpeningType::Pointer opening = BinaryOpeningType::New();
 opening->SetInput(binaryImage);
 opening->SetFeatureImage(featureImage);
 opening->SetBackgroundValue(0);
 opening->SetForegroundValue(255);
 opening->SetLambda(150);
 opening->SetAttribute( BinaryOpeningType::LabelObjectType::MEAN);
 opening->Update();

 typedef itk::ImageFileWriter<ImageType> WriterType;
 WriterType::Pointer writer = WriterType::New();
 writer->SetFileName("input.mhd");
 writer->SetInput(featureImage);
 writer->Update();
 writer->SetFileName("output.mhd");
 writer->SetInput(opening->GetOutput());
 writer->Update();

}

void CreateImage(ImageType::Pointer image1, ImageType::Pointer image2) {

 // Create an image with 2 connected components
 ImageType::RegionType region;
 ImageType::IndexType start;
 start[0] = 0;
 start[1] = 0;

 ImageType::SizeType size;
 size[0] = 200;
 size[1] = 200;

 region.SetSize(size);
 region.SetIndex(start);

 image1->SetRegions(region);
 image1->Allocate();
 image1->FillBuffer(0);

 image2->SetRegions(region);
 image2->Allocate();
 image2->FillBuffer(0);

 // Make a square
 for(unsigned int r = 20; r < 80; r++)
 {
   for(unsigned int c = 30; c < 100; c++)
   {
     ImageType::IndexType pixelIndex;
     pixelIndex[0] = r;
     pixelIndex[1] = c;

     image1->SetPixel(pixelIndex, 255);
     image2->SetPixel(pixelIndex, 100);
   }
 }

 // Make another square
 for(unsigned int r = 100; r < 130; r++)
 {
   for(unsigned int c = 115; c < 160; c++)
   {
     ImageType::IndexType pixelIndex;
     pixelIndex[0] = r;
     pixelIndex[1] = c;
     
     image1->SetPixel(pixelIndex, 255);
     image2->SetPixel(pixelIndex, 200);
   }
 }

}

</source>

CMakeLists.txt

<syntaxhighlight lang="cmake"> cmake_minimum_required(VERSION 3.9.5)

project(BinaryStatisticsOpeningImageFilter)

find_package(ITK REQUIRED) include(${ITK_USE_FILE}) if (ITKVtkGlue_LOADED)

 find_package(VTK REQUIRED)
 include(${VTK_USE_FILE})

endif()

add_executable(BinaryStatisticsOpeningImageFilter MACOSX_BUNDLE BinaryStatisticsOpeningImageFilter.cxx)

if( "${ITK_VERSION_MAJOR}" LESS 4 )

 target_link_libraries(BinaryStatisticsOpeningImageFilter ITKReview ${ITK_LIBRARIES})

else( "${ITK_VERSION_MAJOR}" LESS 4 )

 target_link_libraries(BinaryStatisticsOpeningImageFilter ${ITK_LIBRARIES})

endif( "${ITK_VERSION_MAJOR}" LESS 4 )

</syntaxhighlight>

Download and Build BinaryStatisticsOpeningImageFilter

Click here to download BinaryStatisticsOpeningImageFilter and its CMakeLists.txt file. Once the tarball BinaryStatisticsOpeningImageFilter.tar has been downloaded and extracted,

cd BinaryStatisticsOpeningImageFilter/build

• If ITK is installed:

cmake ..

• If ITK is not installed but compiled on your system, you will need to specify the path to your ITK build:

cmake -DITK_DIR:PATH=/home/me/itk_build ..

Build the project:

make

and run it:

./BinaryStatisticsOpeningImageFilter

WINDOWS USERS PLEASE NOTE: Be sure to add the ITK bin directory to your path. This will resolve the ITK dll's at run time.

Building All of the Examples

Many of the examples in the ITK Wiki Examples Collection require VTK. You can build all of the the examples by following these instructions. If you are a new VTK user, you may want to try the Superbuild which will build a proper ITK and VTK.

ItkVtkGlue

ITK >= 4

For examples that use QuickView (which depends on VTK), you must have built ITK with Module_ITKVtkGlue=ON.

ITK < 4

Some of the ITK Examples require VTK to display the images. If you download the entire ITK Wiki Examples Collection, the ItkVtkGlue directory will be included and configured. If you wish to just build a few examples, then you will need to download ItkVtkGlue and build it. When you run cmake it will ask you to specify the location of the ItkVtkGlue binary directory.