[Paraview] A new problem compiling Paraview 3.10 on linux RHEL 5 clusters with Visit Bridge

Cook, Rich cook47 at llnl.gov
Thu Apr 7 14:27:02 EDT 2011


Never mind, I just set them all and it seems to be building now.  Thanks for the help! 
-- Rich 

On Apr 7, 2011, at 11:20 AM, Cook, Rich wrote:

> Aha, thank you. Could you tell me, what's the difference between HDF5_LIBRARY and HDF5_hdf5_LIBRARY ?  Do I just set them both to the same thing? 
> Thanks
> 
> On Apr 7, 2011, at 11:06 AM, Robert Maynard wrote:
> 
>> Hi,
>> 
>> You need to need to do a clean build with VTK_USE_SYSTEM_HDF5 turned
>> on and set to the hdf5 you used to build silo with.
>> 
>> On Thu, Apr 7, 2011 at 1:59 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>> Hi,
>>> I'm making some progress, but now I'm stuck on including the visit silo reader.  Our silo library seems to depend on HDF5.
>>> 
>>> If I set the following variables:
>>> VISIT_BUILD_READER_Silo:BOOL=ON
>>> SILO_INCLUDE_DIR:PATH=/usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/include
>>> SILO_LIBRARY:FILEPATH=/usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a
>>> 
>>> then the linker fails with some HDF5 unresolved symbols in libsiloh5.a.  What I'd like to do is add  -L/usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib -lhdf5 to the link flags but I cannot find a place to add these.  I tried the following:
>>> 
>>> CMAKE_EXE_LINKER_FLAGS:STRING=   -L/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib   -L/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib -lmili  /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.so
>>> 
>>> however, this gives me a mysterious error
>>> 
>>> [  1%] Generating ../H5lib_settings.c
>>> cd /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/VTK/Utilities/vtkhdf5/src && ../../../../bin/H5make_libsettings > /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/VTK/Utilities/vtkhdf5/H5lib_settings.c
>>> ../../../../bin/H5make_libsettings: error while loading shared libraries: libhdf5.so.6: cannot open shared object file: No such file or directory
>>> make[2]: *** [VTK/Utilities/vtkhdf5/H5lib_settings.c] Error 127
>>> 
>>> I assume this is a conflict between the internal HDF5 support in Paraview and the HDF5 that our silo library was compiled against.  I am not a silo or hdf5 expert.  Can someone help me untangle this?  Thanks!
>>> 
>>> --
>>> ✐Richard Cook
>>> ✇ Lawrence Livermore National Laboratory
>>> Bldg-453 Rm-4024, Mail Stop L-557
>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>> ☎ (office) (925) 423-9605
>>> ☎ (fax) (925) 423-6961
>>> ---
>>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>>> (opinions expressed herein are mine and not those of LLNL)
>>> 
>>> 
>>> 
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>> 
>> 
>> 
>> -- 
>> Robert Maynard
> 
> -- 
> ✐Richard Cook   
> ✇ Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557        
> 7000 East Avenue,  Livermore, CA, 94550, USA
> ☎ (office) (925) 423-9605    
> ☎ (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
> 
> 
> 

-- 
✐Richard Cook   
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557        
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605    
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)





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