[Paraview] A new problem compiling Paraview 3.10 on linux RHEL 5 clusters with Visit Bridge
Cook, Rich
cook47 at llnl.gov
Thu Apr 7 14:27:02 EDT 2011
Never mind, I just set them all and it seems to be building now. Thanks for the help!
-- Rich
On Apr 7, 2011, at 11:20 AM, Cook, Rich wrote:
> Aha, thank you. Could you tell me, what's the difference between HDF5_LIBRARY and HDF5_hdf5_LIBRARY ? Do I just set them both to the same thing?
> Thanks
>
> On Apr 7, 2011, at 11:06 AM, Robert Maynard wrote:
>
>> Hi,
>>
>> You need to need to do a clean build with VTK_USE_SYSTEM_HDF5 turned
>> on and set to the hdf5 you used to build silo with.
>>
>> On Thu, Apr 7, 2011 at 1:59 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>> Hi,
>>> I'm making some progress, but now I'm stuck on including the visit silo reader. Our silo library seems to depend on HDF5.
>>>
>>> If I set the following variables:
>>> VISIT_BUILD_READER_Silo:BOOL=ON
>>> SILO_INCLUDE_DIR:PATH=/usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/include
>>> SILO_LIBRARY:FILEPATH=/usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a
>>>
>>> then the linker fails with some HDF5 unresolved symbols in libsiloh5.a. What I'd like to do is add -L/usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib -lhdf5 to the link flags but I cannot find a place to add these. I tried the following:
>>>
>>> CMAKE_EXE_LINKER_FLAGS:STRING= -L/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib -L/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib -lmili /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.so
>>>
>>> however, this gives me a mysterious error
>>>
>>> [ 1%] Generating ../H5lib_settings.c
>>> cd /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/VTK/Utilities/vtkhdf5/src && ../../../../bin/H5make_libsettings > /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/VTK/Utilities/vtkhdf5/H5lib_settings.c
>>> ../../../../bin/H5make_libsettings: error while loading shared libraries: libhdf5.so.6: cannot open shared object file: No such file or directory
>>> make[2]: *** [VTK/Utilities/vtkhdf5/H5lib_settings.c] Error 127
>>>
>>> I assume this is a conflict between the internal HDF5 support in Paraview and the HDF5 that our silo library was compiled against. I am not a silo or hdf5 expert. Can someone help me untangle this? Thanks!
>>>
>>> --
>>> ✐Richard Cook
>>> ✇ Lawrence Livermore National Laboratory
>>> Bldg-453 Rm-4024, Mail Stop L-557
>>> 7000 East Avenue, Livermore, CA, 94550, USA
>>> ☎ (office) (925) 423-9605
>>> ☎ (fax) (925) 423-6961
>>> ---
>>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>>> (opinions expressed herein are mine and not those of LLNL)
>>>
>>>
>>>
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>>
>>
>>
>> --
>> Robert Maynard
>
> --
> ✐Richard Cook
> ✇ Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557
> 7000 East Avenue, Livermore, CA, 94550, USA
> ☎ (office) (925) 423-9605
> ☎ (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
>
>
>
--
✐Richard Cook
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557
7000 East Avenue, Livermore, CA, 94550, USA
☎ (office) (925) 423-9605
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)
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