[Paraview] PV on SGI Altix: Sgi MPI error

Mon Apr 25 22:24:38 EDT 2011

Hi Pratik,

I am not sure if this will resolve your issue but,
on some system configurations you have to link
MPI with your executable using -lmpi instead of
calling the mpicxx wrapper.

Regards,
George

On Mon, Apr 25, 2011 at 9:54 PM,  <paraview-request at paraview.org> wrote:
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>   1. PV on SGI Altix: Sgi MPI error (pratik)
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> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 26 Apr 2011 07:24:07 +0530
> From: pratik <pratik.mallya at gmail.com>
> Subject: [Paraview] PV on SGI Altix: Sgi MPI error
> To: paraview at paraview.org
> Message-ID: <4DB625BF.5070302 at gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
> On this system, i tried building pvserver (3.10.1)(no qt) with my local
> openmpi lib and the system gcc compilers and it worked perfectly.
> However, the "people incharge" insist that I use the sgi mpt libraries
> for mpi.
> Well, for the previous install(openmpi), i had used mpic++ instead of
> g++ (i read somewhere in mailing list that it solves the errors, and it
> did); for the current install i am getting the error given below. I have
> also attached cmakecache.txt. can anyone please tell me what i must do?
> I have given the right include and lib directories for PV, and mpi.h
> does have some of these functions, so why am i getting this error?
>
> [  4%] Built target vtklibxml2
> [  4%] Built target vtkDICOMParser
> Linking CXX executable ../../../bin/ProcessShader
> /opt/intel/Compiler/11.1/038/lib/intel64/libimf.so: warning: warning:
> feupdateenv is not implemented and will always fail
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Topo_test'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_size'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Test_cancelled'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Finalize'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Buffer_detach'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Graph_neighbors'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Graphdims_get'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Gatherv'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_translate_ranks'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Error_string'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Wtick'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_remote_size'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Reduce_scatter'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Bsend'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_free'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Probe'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Errhandler_create'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Cart_rank'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Intercomm_create'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_DUP_FN'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_size'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Sendrecv_replace'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Graph_map'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Startall'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Testall'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_free'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Iprobe'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Error_class'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Attr_get'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_remote_group'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_intersection'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Send'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Cart_shift'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Rsend_init'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Gather'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_create_resized'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Keyval_create'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Alltoall'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Test'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_difference'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Scan'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_indexed'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Cart_create'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Cart_sub'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Address'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Allreduce'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Keyval_free'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Buffer_attach'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Testany'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Cart_map'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_size'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_range_incl'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Graph_get'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Ssend_init'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Waitsome'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Scatterv'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Recv'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Unpack'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_hindexed'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Cart_get'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Dims_create'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Isend'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Graph_neighbors_count'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Get_count'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Testsome'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Allgather'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_free'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Waitany'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Abort'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Cancel'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Waitall'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_create'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_NULL_COPY_FN'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Op_free'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Graph_create'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_vector'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Cart_coords'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Get_processor_name'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Errhandler_set'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Issend'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Wait'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Rsend'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Init'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_test_inter'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_rank'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Sendrecv'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Irsend'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_struct'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Intercomm_merge'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_get_true_extent'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Alltoallw'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_rank'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Op_create'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Cartdim_get'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Barrier'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_compare'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Allgatherv'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Irecv'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Ibsend'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Bcast'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Alltoallv'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_union'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Pcontrol'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Comm_dup'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_compare'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Reduce'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_group'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Request_free'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Comm_split'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Attr_put'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Bsend_init'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Scatter'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_hvector'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_commit'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Errhandler_free'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Recv_init'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Ssend'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_excl'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Attr_delete'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_range_excl'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Initialized'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Pack_size'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_contiguous'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Wtime'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_NULL_DELETE_FN'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Group_incl'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Send_init'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Type_get_extent'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to
> `MPI_Get_elements'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Pack'
> /opt/sgi/mpt/mpt-1.23/lib/libmpi++.so: undefined reference to `MPI_Start'
> make[2]: *** [bin/ProcessShader] Error 1
> make[1]: ***
> [VTK/Utilities/MaterialLibrary/CMakeFiles/ProcessShader.dir/all] Error 2
> make: *** [all] Error 2
>
> pratik
>
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